Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01793 and BPUM_0280

See Amino acid alignment / Visit BSNT_01793 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_01793___yhjL.1.24716.seq
#    -bsequence dna-align/BPUM_0280___yhjL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01793___yhjL-BPUM_0280___yhjL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01793___yhjL-BPUM_0280___yhjL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01793___yhjL
# 2: BPUM_0280___yhjL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1492
# Identity:     863/1492 (57.8%)
# Similarity:   863/1492 (57.8%)
# Gaps:         332/1492 (22.3%)
# Score: 2216.5
# 
#
#=======================================

BSNT_01793___      1 ATGCAAAAACAGGTT----AAGATTTCAGGTAAAAGCAAAGAAAACATGT     46
                     |||||||.|    ||    |||||.||||||||||||||.|  |..||.|
BPUM_0280___y      1 ATGCAAATA----TTGACGAAGATATCAGGTAAAAGCAAGG--ATTATCT     44

BSNT_01793___     47 CACTAT-----------TAAAACACTTAAAAGGTGACGTACAAGGAAAAG     85
                     ..||.|           |.||.|      |||||   ||.||||.|||  
BPUM_0280___y     45 TCCTTTGCTGGATATGATCAATC------AAGGT---GTTCAAGTAAA--     83

BSNT_01793___     86 AACTTGTTATTGAAGACAGTATTGTAAACGAGCGGTG-GAAACAAGTATT    134
                        .|.|.|||     ||||               || |||.||..||..
BPUM_0280___y     84 ---GTCTGATT-----CAGT---------------TGAGAAGCACCTAGC    110

BSNT_01793___    135 AAAAGAAAAGAT------------------AGATATTG------------    154
                     |||.||||||.|                  ||||||.|            
BPUM_0280___y    111 AAATGAAAAGCTGGTGACGTTCCTTGAGCAAGATATAGGACGCACAGGCT    160

BSNT_01793___    155 -----AACATGACCTTTTCAACTATCAAAAAAATCGTGAAATCAGTAAAG    199
                          ||.||  .||.|||.|.|||.||.|||||...||||    .||||
BPUM_0280___y    161 TGGAAAAAAT--TCTCTTCCATTATAAACAAAATAAGGAAA----AAAAG    204

BSNT_01793___    200 -TCCCTTTTTTGCCTGTAGACAGATTAATAACCAATGATGAAGTGGAAGA    248
                      |.||.|||.|.||.||.||.|.|.|.||..|..|.|||||..|.||.||
BPUM_0280___y    205 ATACCGTTTCTACCAGTCGATAAACTGATTTCAGAGGATGAGATCGATGA    254

BSNT_01793___    249 TAT----------CTTAAATACATTAACTGAAGTTTTGCCAACTGGAAAA    288
                     .||          ||.|||          |||||.|||....||||....
BPUM_0280___y    255 CATTATGCAGGTGCTGAAA----------GAAGTATTGAGCTCTGGCCGT    294

BSNT_01793___    289 TTTACGAGTGGCCCCTATTTAGAGCAATTC--------GAAAA------C    324
                     |||||....||.||.|||        ||||        |||||      |
BPUM_0280___y    295 TTTACTTCAGGACCATAT--------ATTCCGGCGTTTGAAAAGCAGCTC    336

BSNT_01793___    325 GTTTTATCTACATATTTACATAAAAGGTATGTAATTGCAAC--CAGCAGT    372
                     |      ||...||||||...||.|..|||||.|||||.||  ||  |||
BPUM_0280___y    337 G------CTGAGTATTTAGGGAAGAAATATGTTATTGCTACGTCA--AGT    378

BSNT_01793___    373 GGAACCGATGCTATTATGAT-AGGTT--TATTGGCTTTAGGGTTAAACCC    419
                     |||||.|||||..|.||||| ||..|  |||..||   |||..|..|.||
BPUM_0280___y    379 GGAACTGATGCCCTAATGATCAGCCTCATATCAGC---AGGCGTCCATCC    425

BSNT_01793___    420 AGGGGATGAAGTTATCATGCCGGCTAATAGCTTTTCAGCTACTGAAAATG    469
                     |||.||.|||||.||..||||.||.|||||||||.|.||.||.|||||||
BPUM_0280___y    426 AGGAGAGGAAGTCATTTTGCCAGCAAATAGCTTTGCTGCAACAGAAAATG    475

BSNT_01793___    470 CTGTGTTAGC-TTTGGGAGGC-GTTCCTATCTATGTAGATATTAACCCAC    517
                     |.|||.|.|| .||||  ||| |||||..||||||.|||||||.|.|||.
BPUM_0280___y    476 CAGTGCTTGCGATTGG--GGCTGTTCCGGTCTATGCAGATATTGATCCAG    523

BSNT_01793___    518 AAACATTCTGCATCGATCC---TGACAAAATTGAAGAAGCA-ATAACTCC    563
                     |.||.|.||||||.|..||   ||   ||||.| ||||||| ||.||   
BPUM_0280___y    524 ATACTTACTGCATGGCACCGAGTG---AAATAG-AGAAGCATATCAC---    566

BSNT_01793___    564 TTATA-CAAA----GTTTATTCTACCTGTGCATTTATACGGAAAACATTC    608
                       |.| ||||    .|..|||||.||.||.||||||||.||||||||..|
BPUM_0280___y    567 --AGATCAAACGGCATGCATTCTTCCGGTTCATTTATATGGAAAACAAGC    614

BSNT_01793___    609 AGACATGCAG--CATATC--CGTCAAATCGC---AAATCGTTATGAATTA    651
                     .||.|||.||  .||.||  ||    ||.||   |||.|   |||...|.
BPUM_0280___y    615 GGATATGAAGGCGATTTCGGCG----ATTGCGAAAAAGC---ATGGGCTG    657

BSNT_01793___    652 AAAGTAATTGAAGATGCCTGCCAAGGAATTGG----ACTGACAGACTTAG    697
                     |||.|.||||||||||.|||.||.|..||.||    ||   |.|.|||.|
BPUM_0280___y    658 AAAATCATTGAAGATGGCTGTCAGGCGATCGGCAGCAC---CGGCCTTGG    704

BSNT_01793___    698 -GAAAGTATGCAGACATCACTACAT----------TAAGTTTTAATCCCT    736
                      |.|  ||||.||          ||          |.||.||||||||.|
BPUM_0280___y    705 CGCA--TATGGAG----------ATGGGCTTGTTCTTAGCTTTAATCCAT    742

BSNT_01793___    737 ATAAGAATTTGGGTGTATGTGGCAAGGCTGGGGCAATAGCAACTGATAAT    786
                     |.||.|||.|.|||||.||.||||||||.||.||.||.||.||..||.||
BPUM_0280___y    743 ACAAAAATCTTGGTGTTTGCGGCAAGGCGGGAGCCATCGCGACAAATGAT    792

BSNT_01793___    787 GAAGAACTCGCTAAAAAATGCATTCAATTTAGTTATCACGGTTTTGAAGT    836
                     ||||...|.||..|||||||.||..||.|.||.||||||||.||||||||
BPUM_0280___y    793 GAAGCTTTAGCAGAAAAATGTATGGAAATCAGCTATCACGGCTTTGAAGT    842

BSNT_01793___    837 A--AATGTAAAAAATAAGAAAGTCATCAATTTTGGATTTAATTCAAAAAT    884
                     |  ||.|  ||||||...|||..||...|.|.|||.||||||||.|||||
BPUM_0280___y    843 AGGAAAG--AAAAATGTCAAACGCAGTGACTATGGCTTTAATTCGAAAAT    890

BSNT_01793___    885 GGACAATTTACAGGCAGCAATTGGTTTAGAGAGAATGAAGTACCTTT--C    932
                     .||.|||||.|||||.||.|||||..|.||..|.||||||||  |||  .
BPUM_0280___y    891 TGATAATTTGCAGGCGGCGATTGGACTCGAACGCATGAAGTA--TTTAGG    938

BSNT_01793___    933 ATTAAACAACTTCAAAAGACTGTTCTTGGCGGATAGATACATTACCCAAT    982
                     ||||.|.|||||.|||.|..|.|.|||.||..|..|.||||||..|||..
BPUM_0280___y    939 ATTACAAAACTTTAAACGTTTCTACTTAGCAAAGCGCTACATTGACCAGC    988

BSNT_01793___    983 TAGCAGA-GTTGCAGAATAAAGGCTTTA-TTGAA--TTACCAGAATTAAG   1028
                     | |||.| |.|..||.||.||||  .|| |||||  ||.|      ||||
BPUM_0280___y    989 T-GCAAACGCTAGAGGATGAAGG--ATACTTGAAGCTTCC------TAAG   1029

BSNT_01793___   1029 -----TGAAGATCATGTATGGCATCTGTTTCCTATTAAGGTGAGAACAGA   1073
                          .||.|||||||||||||||.||||.||.||.|.||||    |.||
BPUM_0280___y   1030 CTGACAGATGATCATGTATGGCATTTGTTCCCGATCAGGGTG----CTGA   1075

BSNT_01793___   1074 AGATAGAGC-AGAT-ATCATG--ACTAAATT-----AAATGAAGATTTTG   1114
                     ||..|||.| |||| |.|.||  .|.|||||     |||||        |
BPUM_0280___y   1076 AGGGAGAACGAGATGAGCTTGCCGCGAAATTGCTGGAAATG--------G   1117

BSNT_01793___   1115 GTGTTCAAACAGATGTATATTATCCAATACTGTCTCAT----ATGCAA--   1158
                     |..|..|.||||||||.|||||.|||||.||.||.|||    || |||  
BPUM_0280___y   1118 GCATAGAGACAGATGTTTATTACCCAATCCTATCGCATCAGCAT-CAAAC   1166

BSNT_01793___   1159 AAAACTCCTTT------AGTACA---GGACAAGTATGCAGGACTCCCATT   1199
                     |||.|||.|||      ||||.|   ||||.|              ||.|
BPUM_0280___y   1167 AAATCTCGTTTCTCAAAAGTATAAACGGACGA--------------CACT   1202

BSNT_01793___   1200 GGTTCATACGGAAAAGGC-TCATAGTCAGGTACTGCATTTGCCTTTATAT   1248
                     |...||.||||||||.|| .||.|| ||..||||.||..||||..|.|||
BPUM_0280___y   1203 GCCGCACACGGAAAAAGCAGCACAG-CAATTACTTCACCTGCCGCTGTAT   1251

BSNT_01793___   1249 CC-GTCAT-TTACTTTAG-AAGAACAAGACAGAGTAATGGAGGGACTGTT   1295
                     || |.||| ..|||   | ||||.||.||.|..||.||.|||||  .|||
BPUM_0280___y   1252 CCAGGCATGCCACT---GCAAGATCAGGAGAAGGTCATCGAGGG--GGTT   1296

BSNT_01793___   1296 --TCATGTTATTAAG---------CAAGAAATCGGAGTATAA   1326
                       |||||||||.|||         |||.||            
BPUM_0280___y   1297 CATCATGTTATCAAGTCTTCCATTCAATAA------------   1326


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