Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06259 and BPUM_0293
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:42
# Commandline: needle
# -asequence dna-align/BSNT_06259___yyaJ.1.24716.seq
# -bsequence dna-align/BPUM_0293.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06259___yyaJ-BPUM_0293.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06259___yyaJ-BPUM_0293.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06259___yyaJ
# 2: BPUM_0293
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1733
# Identity: 780/1733 (45.0%)
# Similarity: 780/1733 (45.0%)
# Gaps: 733/1733 (42.3%)
# Score: 1231.0
#
#
#=======================================
BSNT_06259___ 1 ATGAATACGATCTTCAAACAAAAG--------AATACACATCCTTTCTCA 42
||| |||.| |.||| |||.||.| ||||||
BPUM_0293 1 ATG---ACGTT--------AGAAGTCAGCGGAAATTCAAA----TTCTCA 35
BSNT_06259___ 43 -AACGCAGCGAATCGTT--TAGACCGCCTTC----CGATTTCACGCGTTC 85
.|.|.| |.|.|.||| |||| .|||| |.| ||.|||.|
BPUM_0293 36 TGATGGA-CAAGTTGTTGATAGA---GCTTCACAACTA-TTGACGAG--- 77
BSNT_06259___ 86 ATTTCCAAGTGTTAACCGCTCTC-----GGCATT---------GT----T 117
|.|...|||||| |||..|.|| |||||| || |
BPUM_0293 78 AATGGAAAGTGT--ACCTTTTTCTAGATGGCATTTAAAACCTCGTATCAT 125
BSNT_06259___ 118 TAT-------------TTCTTTGAT----------CTCGCAGATTTATTT 144
||| ||.|||||| ||| |.|.|||
BPUM_0293 126 TATGGGATCTGCCACCTTTTTTGATGCTTTTGATGCTC-----TGTCTTT 170
BSNT_06259___ 145 ACCCTCAGCAATGTAGCGCCGGCACTGATTGAACAT-TGGGG-----CAT 188
|.|.| .||||...||.|..||.||.| .||| |||.| ||
BPUM_0293 171 AGCGT-----TTGTACTCCCAGTTCTCATCG-GCATGTGGAGTTTATCA- 213
BSNT_06259___ 189 CCCGCTTTCAACTATTGCTAACGTAACGGCTGCTTCGTTTTTAGGCATGT 238
||.|| |||| ||||.| |||| ||.||.||..||.
BPUM_0293 214 CCTGC--TCAA--ATTGGT-------------CTTC-TTATTGGGTCTGG 245
BSNT_06259___ 239 TTTTA--------------GGCGC----TTCACTGGGCGG--------AC 262
||.|| ||.|| |||..||||.|| |.
BPUM_0293 246 TTATATAGGACAAGCGATTGGTGCCATTTTCTTTGGGTGGTTAGCAGAAA 295
BSNT_06259___ 263 GGC-TGTCCGATCG-----AATCGGCCGCAAAAAAGCCTTAAATC----- 301
||| ||.||| || |.| |||||...|.||..|.||
BPUM_0293 296 GGCGTGGCCG--CGTTTTTAGT-----GCAAAGTGGACTGTACTCCTCAT 338
BSNT_06259___ 302 ------------TATT---TGTCTTTGTTTTCTCAATCGCATCGCTATGC 336
|||| || |.||||||| |.|.
BPUM_0293 339 GTCCGTCATGAGTATTGCATG--TGTGTTTTC--------------AGGT 372
BSNT_06259___ 337 AATGCTGCGGCATGGGACATTCCATCTTTAATGACATTCCGTTTTCTCAC 386
|||..| ||||.|| |.||||.| ||.||||||.| ||
BPUM_0293 373 AATTTT-----ATGGCAC------TGTTTATT----TTTCGTTTTAT-AC 406
BSNT_06259___ 387 -CGGATTTGGCGT-----------TGC----AGCCGCCATGGTCATTACG 420
.||..||||.|| ||| |||.||| ||||
BPUM_0293 407 AAGGCATTGGGGTAGGAGGAGAGGTGCCGGTAGCAGCC----TCAT---- 448
BSNT_06259___ 421 AATAGCTATTTGGCGGAATTTTTCCCT--TCAAGTGTACGTGGAAAATAT 468
|||.|.|| ||..|.|.||.| |||||.| .|.||.|.||
BPUM_0293 449 -ATATCAAT------GAGCTGTCCCGTGCTCAAGGG--AGAGGCAGAT-- 487
BSNT_06259___ 469 ATTTCTTTTTGTGC-------CATGATT---------GGATTGATCGGGG 502
|||||.||| .|||||| ||.||.||
BPUM_0293 488 -----TTTTTATGCTGTATGAGATGATTTTTCCTTTAGGTTTAAT----- 527
BSNT_06259___ 503 TGCCGATCAC----CAACATTGTGTCTGCCTTTGTCATTCCT--CTTGGT 546
||||.| ||| ||.| .|||.|||||..|.||| |||
BPUM_0293 528 ----GATCTCAGCTCAA-ATCG---GTGCATTTGTTGTACCTAGCTT--- 566
BSNT_06259___ 547 TCATGGGGATGGA---GGCTAGTATTTGTATGGGGTGC--CGTCGGCCT- 590
|||| |||| ||.| ||.|||| ||.|||.|| ||..||.||
BPUM_0293 567 ---TGGG--TGGAAGTGGAT-GTTTTTG-ATTGGGGGCATCGGAGGTCTC 609
BSNT_06259___ 591 ------TATTTATTTTTTCTTTATTCGACGGCTGGAAGAGTCGCCTCGCT 634
|.|.||||.||| |||||...||| .||.||.||..|.|
BPUM_0293 610 ATCGTCTTTGTATTCTTT-TTTATGTTACG------TGAATCTCCAAGGT 652
BSNT_06259___ 635 GG-----CACGAAAATCGCGGGGAATATGCGA--AAGCCGATGCGATCCT 677
|| ..||||| ||.|.||..|| |||||||
BPUM_0293 653 GGTTGATTTCGAAA-------GGCAGATTTGATGAAGCCGA--------- 686
BSNT_06259___ 678 CAACCGAATTGAGGCACAGGTTGAAAAGGAGAAAGGCCCGCTTCCGGCAG 727
|| ||||| .|||| ||||| || |.||
BPUM_0293 687 -AA--GAATT---------ATTGA-----AGAAA-------TT---GAAG 709
BSNT_06259___ 728 CATCCCAGCCTAAAGT------AAGCGAA--ACTGTTAAGCAGCATGCAG 769
| .||| ||.|||| .|||| |||| |.|||.
BPUM_0293 710 C-----------TAGTACTGACAAACGAATGCCTGT--AGCA--AAGCAA 744
BSNT_06259___ 770 GT---TACGCCGGCTTATTGAAA--GGC--------AGA----------- 795
|| || ||.| ||.||||| ||| |||
BPUM_0293 745 GTATCTA-GCAG---TACTGAAAAGGGCGACTGGAAAGAGCTTTTTTCAA 790
BSNT_06259___ 796 -----AACCTCAAAATCAC---CATCGTATTATCAGCTG--TATGGATT- 834
.|||..||||..|| .||||||| |..| |||||.||
BPUM_0293 791 CTTTCTACCGTAAAAGAACATTGATCGTAT-----GGGGACTATGGTTTT 835
BSNT_06259___ 835 --------TTTGAAACGTTTGGGTTTTACGGATTTGCTTCATGGGTT-CC 875
||||.|.||..||| |||| |.|..|| |||| ||
BPUM_0293 836 CTGCCTACTTTGTATCGAATGG--TTTA---AATAACT-----GGTTACC 875
BSNT_06259___ 876 AAG-CCTGCTAAAAAG-----CAATGGCGTAACCA--TGGAAAATACATT 917
||| |.|..|||.|.| |||| |..||| ||| |.||.||||
BPUM_0293 876 AAGTCTTTATAATACGGTTTACAAT----TTGCCAGTTGG-AGATTCATT 920
BSNT_06259___ 918 ATGG--------TAT----AACGTATTGCATTCCGTCGGCG-CTCCACTT 954
|.|| |.| ||..|.||.||..||||.||.| .|.|.|||
BPUM_0293 921 AAGGGCAGCCTCTCTGACAAATATTTTACAGACCGTTGGTGTATTCGCTT 970
BSNT_06259___ 955 GGCGCACTGCTCGGCTCCATGATTTCCGAAAGATTTCAAAGAAAATGGAT 1004
| ||| ||||...|..||| ||||.| |||
BPUM_0293 971 G------TGC-----------ATTTTTAATTGAT---AAAGTA---GGA- 996
BSNT_06259___ 1005 TTTAGCTGCGAGTGCGTTTCTGACGG---CCATCGC-----------CGG 1040
|||..||| ||| || ||||.|| |.|
BPUM_0293 997 --------CGAAAGCG---CTG--GGCAACCATTGCATTTATCGTAACAG 1033
BSNT_06259___ 1041 GCTCTTATATGGTATGACT--TTTA-----------------TTC-CCAT 1070
|..||| ||| |.||| |||| ||| |||.
BPUM_0293 1034 GTGCTT-TAT----TAACTGCTTTATGGATCAGCGGAGCGAGTTCTCCAG 1078
BSNT_06259___ 1071 CA----TGATCATTGTATTT--GGT------TTTATCGTGAAT------- 1101
.| ||||| ||||| ||| .||| || ||||
BPUM_0293 1079 AAAGTGTGATC----TATTTAGGGTCTGCTGCTTA-CG-GAATGATGGGG 1122
BSNT_06259___ 1102 ---ATCACAGAACGGGTCTTTACCTCGAACTTATACGCCTATACATCTGA 1148
||.||| |.|||| |||.| |.|| ||||||.||||
BPUM_0293 1123 ACGATTACA-----GTTCTT---CTCTA---TTTA----TATACACCTGA 1157
BSNT_06259___ 1149 ACCTTATCCGAC-----TG-----AAT----ACCGCTCGTCTG--GCAGC 1182
|..||||||.|| || ||| ||.| |.|.|| .||||
BPUM_0293 1158 AATTTATCCAACACGTATGAGGGTAATTGGAACGG--CATTTGCTACAGC 1205
BSNT_06259___ 1183 --GGTTTAGCCTATGGTCTTGGCCGTTTTTCAAACATTTTTGGCTC--AT 1228
||.||||.| ||||| |||...| |.|||| ||
BPUM_0293 1206 TTGGCTTAGGC--------TGGCC-----TCAGCGA----TCGCTCCTAT 1238
BSNT_06259___ 1229 TGCTTG-TCGGATTTATTGCCGTT-CAGCT---CGGCTATATCAGCGTCT 1273
| .|| |.||.|||||| || .||.| ||| |.|.|||.| |.|
BPUM_0293 1239 T--ATGATAGGCTTTATT----TTAGAGGTAAGCGG-TGTTTCAAC-TAT 1280
BSNT_06259___ 1274 TCTTATT-------------------TATTGGGGGCTGCTGGCTCGCTTG 1304
|.||||| ||.||||.|| .
BPUM_0293 1281 TTTTATTCTTTTCGCAAGTGTGACTGTAGTGGGAGC-------------A 1317
BSNT_06259___ 1305 CTCCTTGCTGTTAATCTTCTTCGGTCCTAATACGAATG--CAAAAC---- 1348
.|.||||||.|||| |||| |.||||
BPUM_0293 1318 ATTCTTGCTTTTAA--------------------AATGATCGAAACGCGC 1347
BSNT_06259___ 1349 -AGATTTAA------------------------ 1356
||| ||
BPUM_0293 1348 GAGA---AAGTATTAGAGGATATTGCACCGTGA 1377
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