Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00572 and BPUM_0302
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:22
# Commandline: needle
# -asequence dna-align/BSNT_00572___ycgP.1.24716.seq
# -bsequence dna-align/BPUM_0302___ycgP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00572___ycgP-BPUM_0302___ycgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00572___ycgP-BPUM_0302___ycgP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00572___ycgP
# 2: BPUM_0302___ycgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1381
# Identity: 795/1381 (57.6%)
# Similarity: 795/1381 (57.6%)
# Gaps: 293/1381 (21.2%)
# Score: 2029.5
#
#
#=======================================
BSNT_00572___ 1 ATGGAAGAGCTTTTAGAGAGAG-TTTTTTCATTTTCAGATGTTGATAAGC 49
|||||||||.|.||||| |.|| ||....||||||..|||||.||||||.
BPUM_0302___y 1 ATGGAAGAGATATTAGA-AAAGCTTCACACATTTTTTGATGTCGATAAGT 49
BSNT_00572___ 50 TGATTGATTTTATTAGC---TA-TGAACTGCAAAAGCCAGTGATACTGGA 95
|.||||..||||||||| || |.|| ||||.|||||.||..|.||
BPUM_0302___y 50 TAATTGCATTTATTAGCGGGTATTTAA----AAAAACCAGTCATTTTAGA 95
BSNT_00572___ 96 AAGCGCGGATT----TCTTTTTGCTAGCCTATAATTCTTACTATATTAAC 141
||||.|.||.| .||..||||| |||||.||||||...|||.|.
BPUM_0302___y 96 AAGCACAGAGTGCCAGCTCCTTGCT----TATAACTCTTACAGCATTCAG 141
BSNT_00572___ 142 CATTTTGATTCTGCCAACCAGCAGACTATTTTTTCGAAAAAGTGTCC--G 189
||.|||||..|.|.|||.|||||.||.|||||.||.|||.|.||||| |
BPUM_0302___y 142 CAGTTTGACCCAGTCAATCAGCAAACGATTTTCTCAAAAGAATGTCCAGG 191
BSNT_00572___ 190 GTCCAGATTTTTGAGAGGTTTCTGAAGGACGGAATTATTGAAAAATTGAA 239
||| ..||.|.||..|||| ||| |||
BPUM_0302___y 192 GTC--TGTTGTCGATTGGTT----------------------AAA--GAA 215
BSNT_00572___ 240 AACA------------------------GAGCCTGAGCCTTTT------- 258
|||| |||.|..||||||||
BPUM_0302___y 216 AACAGGGGTCATCGAGCGGCTTCACAAGGAGTCAAAGCCTTTTTATGTGA 265
BSNT_00572___ 259 -CGCGTCAATAAAATTGA-AAGCATTGGGTTAAACCAGAGGGTGGTCGTG 306
|| |||| ||| .||| |.|||||.||.|.|.||||.|..|||
BPUM_0302___y 266 GCG-GTCA-------TGACGAGC-TCGGGTTTAATCGGCGGGTAGCTGTG 306
BSNT_00572___ 307 AGTGCAAAGCACAAAGGGGAAGTCATGGGCTACATCTGGATTCAGGAGCT 356
||.||.|||||.|||...||.||..|.||||..||.|||.|.|||||..|
BPUM_0302___y 307 AGCGCCAAGCATAAACAAGAGGTTGTCGGCTTTATTTGGGTGCAGGACAT 356
BSNT_00572___ 357 GGACCAAAATCTGACGGATGAAGAGCTCGACTTTTTGTACGAGACCTCCT 406
.||..|...|||..|..|.||.|||||..|.||||||.||||..|.||.|
BPUM_0302___y 357 TGAGGATTCTCTCTCTCAAGAGGAGCTGCAATTTTTGCACGAAGCTTCTT 406
BSNT_00572___ 407 TCCATGTCGGGAAAA-TCATTTATAAAACGAATAAATTGAAAC------A 449
|.||.|| ||||||| |.|||||||| |||||| ||||| |
BPUM_0302___y 407 TTCAAGT-GGGAAAAGTGATTTATAA---GAATAA---GAAACAGCTGGA 449
BSNT_00572___ 450 GGAAAAGGAAGAAAAAGCA-----GAGGATCTCATCAAACGGGCGATCTA 494
|.||||||||| ||| ||.||..|..|||||..||..||..|
BPUM_0302___y 450 GAAAAAGGAAG-----GCAAGATTGAAGAATTTTTCAAAAAGGTCATGGA 494
BSNT_00572___ 495 TCAGCAATT---TACCTCTGAGAAG--GAACTCAGACGGGAAGCTGA--- 536
|.|.||.|| ||| ||||| |||||.|...||||.|||||
BPUM_0302___y 495 TGATCATTTTTATAC-----AGAAGAAGAACTGAAGTGGGAGGCTGAGAA 539
BSNT_00572___ 537 ---AAGGATCAACACCGTGCTGCCTTCCATGTTTTCAGTTGTGATCCTGC 583
|||.||| || ||||||..|..|.|||.|.||..||.||.|.|
BPUM_0302___y 540 TTTAAGCATC----CC--GCTGCCAGCTGTATTTACTGTCATGGTCGTAC 583
BSNT_00572___ 584 ACGCCGC--------AAATGGGGATGGGGAAGCGGTTGAGGATTTAAAGG 625
||||.|| ||| |.||..|||..||.|||.|.||||
BPUM_0302___y 584 ACGCTGCCGATAACAAAA--------GTGAGACGGCAGAAGATGTGAAGG 625
BSNT_00572___ 626 AAAATATCAGGTCGTACCTGAATTTACGGGATAAGGTCAGTCATGTCTTA 675
|....||..||.||||..||.|..||...||.|||||.|.|||.||.|
BPUM_0302___y 626 ACGTCATTCGGACGTATTTGCAGCTAGAAGACAAGGTGAATCACGTAT-- 673
BSNT_00572___ 676 ACGATCGAATCAA----ATATTGTCATCGTCGTA----GCGAGTTTTTCC 717
|| ||...|||| |.|||| |.||..|| || ||.||.||.
BPUM_0302___y 674 AC--TCCGTTCAAGCCGACATTG---TGGTGATATTGGGC-AGCTTGTCA 717
BSNT_00572___ 718 CAAAAAAGCTCCGTCTCCTCAGC---AGCTTCTGAGTTTATTAACAAGCT 764
.| |||.| .||||.| |||..|||.| |||
BPUM_0302___y 718 GA--------CCGAC-ACTCACCGAAAGCGACTGCG-----------GCT 747
BSNT_00572___ 765 GTTAACACATTTTCACT----TTCAA---AAA----------ATACCTAC 797
| ||.|..||.|| |.||| ||| || |||.|
BPUM_0302___y 748 G-----ACGTCATCGCTCATCTGCAATCGAAAGCGCATGCCCAT-CCTTC 791
BSNT_00572___ 798 -CCCTATTTATATCGGTATCGGAAACGAATAT---AATCACCTATTAAAA 843
|||| |.|||||.||.||.||||..||.||| .||..| ||.|||
BPUM_0302___y 792 TCCCT-TGTATATTGGGATGGGAAGAGAGTATCGAGATGTC--ATGAAA- 837
BSNT_00572___ 844 CTTGGCAAGAGCTACACA--------GAAGCACTTGAAGTCATCAAAGCC 885
|.||| |||| | |||||..|.||.|||.|.||.||.
BPUM_0302___y 838 ------ATGAG-TACA-AGTCGATTTGAAGCGATAGAGGTCGTGAAGGCT 879
BSNT_00572___ 886 GCAGAAATCACCGGCAATCAGGAAAA-----CATTCCATATGAATATGCC 930
|...||||....|| ||||.|| .|||||||||||.||.|..
BPUM_0302___y 880 GTGAAAATTGTGGG-----AGGACAAGAGCTGATTCCATATGATTACGAA 924
BSNT_00572___ 931 AAACTCGGCATTTACCGCTATTTAGA----------AAGCATC--GAACA 968
||.||.||..|||.|||.|..||||| |..|||| .||.|
BPUM_0302___y 925 AATCTAGGGGTTTTCCGGTTCTTAGACTCGATTTACAGCCATCAAAAAAA 974
BSNT_00572___ 969 GAAAAATGAATTTTTAGAATACGAGAATAAAGATTTAGCTTTA---TTAA 1015
|||||||||.|| .|||..|||||| .||| ||.|
BPUM_0302___y 975 GAAAAATGATTT------------CAATCCAGATTT---GTTACGTTTGA 1009
BSNT_00572___ 1016 AAGCGAAAGACGAAGAAAGCAGCACTGAGCTGCTC-------AAAACCTT 1058
|||..||||||...||.|||...|| ||| |||||..|
BPUM_0302___y 1010 AAGAAAAAGACCGTGACAGCCAAAC-------CTCATTTTTAAAAACGCT 1052
BSNT_00572___ 1059 GGAAATCTATCTCCTCAACAACTGCAAAACAAAACCAGCGGCAGAACAGC 1108
||||.||||..|..|.||.||||||||...|||.|||||.|||||.|||.
BPUM_0302___y 1053 GGAAGTCTACTTATTGAATAACTGCAAGCTAAAGCCAGCCGCAGAGCAGT 1102
BSNT_00572___ 1109 TGTTTATTCACCAAAATACATTGAATTACCGCATCAAACAGATTACTGAG 1158
||||||||||.|||||||||||.||.||.||.||.|||||.||...||||
BPUM_0302___y 1103 TGTTTATTCATCAAAATACATTAAACTATCGAATGAAACAAATCTTTGAG 1152
BSNT_00572___ 1159 ATGACGTCGATCGATTTAAGCGATTTCAGAACGCGGTGCCAGCTCTATCT 1208
|||||.||.|||||||||||..|.|||||...|||.||..||.|.|.|.|
BPUM_0302___y 1153 ATGACCTCAATCGATTTAAGTCACTTCAGCCAGCGATGTGAGTTATTTAT 1202
BSNT_00572___ 1209 CGATTTGATGCTGATG-AAAAAGA--AATAA 1236
.||.||.|||||.||| ||||||| ||||.
BPUM_0302___y 1203 TGAATTAATGCTAATGAAAAAAGACCAATAG 1233
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