Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00917 and BPUM_0303

See Amino acid alignment / Visit BSNT_00917 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:37
# Commandline: needle
#    -asequence dna-align/BSNT_00917___ydfA.1.24716.seq
#    -bsequence dna-align/BPUM_0303___arsB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00917___ydfA-BPUM_0303___arsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00917___ydfA-BPUM_0303___arsB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00917___ydfA
# 2: BPUM_0303___arsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1377
# Identity:     901/1377 (65.4%)
# Similarity:   901/1377 (65.4%)
# Gaps:         147/1377 (10.7%)
# Score: 2631.0
# 
#
#=======================================

BSNT_00917___      1 TTGACATCAATGATTTTGGCAGTATTCATCTTTTTAT--TAACTCTAGTA     48
                     |||..|.||.|.|..|||||..|.||.|  ||||.||  |.||.||.||.
BPUM_0303___a      1 TTGGGAGCAGTCACCTTGGCCATTTTGA--TTTTCATCCTGACCCTCGTC     48

BSNT_00917___     49 TTGGTCATATGGCAGCCGAAAAATTTATCTATAGGGTGGTCAGCCTGTGG     98
                     .|.|||||.||||||||...|..||||.|.||.||.||||||||.|||||
BPUM_0303___a     49 CTCGTCATTTGGCAGCCCGGACGTTTAACCATTGGATGGTCAGCATGTGG     98

BSNT_00917___     99 AGGCGCAGTTTTAGCTCTAATAGCAGGTGTTGTCAATTTTCAT------G    142
                     ||||||..||.|.||   |.|.||...||.||||   .|||||      |
BPUM_0303___a     99 AGGCGCCATTCTTGC---ACTTGCCTTTGGTGTC---GTTCATCTGGGCG    142

BSNT_00917___    143 ATGTGT--TAACTGTGACAGGGATTGTTTGGAATGCGACCTTGGCTTTTG    190
                     ||||||  .||  |||||....||.||.|||||.||.||.||.||.|||.
BPUM_0303___a    143 ATGTGTGGGAA--GTGACGCAAATAGTATGGAACGCAACATTTGCGTTTA    190

BSNT_00917___    191 TGGCCATCATACTGATATCGTTAATTCTTGATAATATCGGTTTCTTTGAA    240
                     |.|.|||.||..||||.|||||||||.|.|||.|.|||||.||.||||||
BPUM_0303___a    191 TTGGCATTATTATGATTTCGTTAATTTTAGATGAAATCGGCTTTTTTGAA    240

BSNT_00917___    241 TGGGCAGCGCTTCATATGGCTAAGGCTGCAAAAGGAAACGGTGTGCGGAT    290
                     |||||.||.||.||||||||.||.||.||||||||.||||||||.||.||
BPUM_0303___a    241 TGGGCTGCACTGCATATGGCAAAAGCCGCAAAAGGGAACGGTGTCCGCAT    290

BSNT_00917___    291 GTTCGTTTATGTATCTCTATTAGGAGCTATTGTCGCCGCGTTATTTGCAA    340
                     |||..|||||.||.|..|..|.||.|||.|.||.||.||.||.|||||.|
BPUM_0303___a    291 GTTTATTTATTTAACATTGCTTGGCGCTGTCGTGGCTGCTTTTTTTGCGA    340

BSNT_00917___    341 ATGACGGTGCAGCTCTTATATTGACACCAATCGTATTAGCGATGGTCAGA    390
                     ||||.||.|||||.||.||.|||||.||.|||||.||..|..|.||.|||
BPUM_0303___a    341 ATGATGGAGCAGCACTGATTTTGACCCCGATCGTCTTGTCTGTAGTGAGA    390

BSNT_00917___    391 GCATTACATTTTAATGA----AAAATTAGTTTTTCCTTTTATCATTGCCA    436
                     ||.|||.|..|..||||    |    |..|..|.||||||.|.||.||.|
BPUM_0303___a    391 GCGTTAAACCTAGATGAGCGGA----TGATCCTGCCTTTTGTGATGGCGA    436

BSNT_00917___    437 GCGGATTTATTGCGGATACCACTTCGCTTCCTTTAGTAGTGAGCAATTTG    486
                     ||||.||||||||.|||||.||.||..|.||.||.||..|.||.||.|||
BPUM_0303___a    437 GCGGCTTTATTGCAGATACAACCTCTTTGCCATTTGTCATTAGTAACTTG    486

BSNT_00917___    487 GTCAACATTGTTTCAGCGGACTATTTTCATATTACGTTTATTGATTATGC    536
                     |||||.||.||.|||||.|||||||||||||||..||||.|.||.|||.|
BPUM_0303___a    487 GTCAATATCGTATCAGCCGACTATTTTCATATTGGGTTTCTAGAATATAC    536

BSNT_00917___    537 ATCCAGAATGGTTGTCCCGTA-CTTGTTTTCGCTGCTG--GCGAGCATCA    583
                     |.|.|..|||.|.||.||..| |||| |.|||||  ||  ||||||||..
BPUM_0303___a    537 AGCAAACATGTTCGTACCAAACCTTG-TGTCGCT--TGGAGCGAGCATGC    583

BSNT_00917___    584 TTGTACTTTACCTTTTCTTTAGAAAAAGC--ATACCAAAACGCTATGATC    631
                     |.||.|||||  |.|..||||...|||||  ||.||||||...||.||||
BPUM_0303___a    584 TAGTGCTTTA--TGTGTTTTACCGAAAGCTTATTCCAAAAACATACGATC    631

BSNT_00917___    632 TGACTGAGGTTAAAAAACCTGTTGAAGCAATTAAAGATC----AAA---A    674
                     ||.|..|.|..||..||||.|.|..|||       ||||    |.|   .
BPUM_0303___a    632 TGTCACAAGCGAAGGAACCGGCTTCAGC-------GATCCGGGACATCCG    674

BSNT_00917___    675 CATGTTCAGACTGTCATGGTATAT-CTTAGGGCTG-CTGTTAATTGGATA    722
                     |||||||.|..||||.||||||.| |||  ||||| |||.|..|.||.||
BPUM_0303___a    675 CATGTTCCGCTTGTCTTGGTATGTGCTT--GGCTGTCTGCTTGTCGGTTA    722

BSNT_00917___    723 TTTTGCAAGTGAATTTTTTTCTATCCCTGT----ATCAGTGGTAGCGGGC    768
                     |||||.|.|.|||.||.||...||.||.||    ||||    |.|.||||
BPUM_0303___a    723 TTTTGGAGGGGAACTTATTGGAATTCCGGTCTCCATCA----TTGTGGGC    768

BSNT_00917___    769 AGCATTGCGATCATTTTCTTAATCGCTGCGCAA-AAG-AGTCCG-----G    811
                     .|.|||||..|..||||||| .|.|||| |||| ||| ||||||     |
BPUM_0303___a    769 GGTATTGCCCTTGTTTTCTT-GTGGCTG-GCAAGAAGAAGTCCGCAAGTG    816

BSNT_00917___    812 CCGTCCATACAAAGAAAGTG--GTGAAAGAGGCGCCATGGGCTATCGTAT    859
                     .||     ||||  ||.|||  .|.|||||.||.||.|||.|.||.||.|
BPUM_0303___a    817 GCG-----ACAA--AACGTGTCATAAAAGAAGCACCGTGGTCGATTGTCT    859

BSNT_00917___    860 TCTTTTCAATTGGCATGTACGTTGTTGTGTATGGTGTCCGA--AATGCCG    907
                     |.||.||||||||||||||.||.||.||.||||  |.|.||  ||||.||
BPUM_0303___a    860 TTTTCTCAATTGGCATGTATGTCGTCGTATATG--GACTGAAGAATGTCG    907

BSNT_00917___    908 GATTAACGGATGTCCTTTCAG-ATGTGAT---TCAAGCCGCAGCTGATCA    953
                     |..|.||.||..|..|..|.| ||| |||   .||||..|||.|   .||
BPUM_0303___a    908 GTCTCACAGAAATATTGGCGGCATG-GATCGAACAAGGAGCATC---GCA    953

BSNT_00917___    954 AGGATTGTTTGCTGGGACAATTGGAATGGGCTTTATTGCGGCGATTCTTT   1003
                     .||.|||.||||.||.||.||....||||||.|..||||.||..|.||||
BPUM_0303___a    954 TGGCTTGCTTGCGGGAACGATGTTTATGGGCGTGCTTGCCGCAGTGCTTT   1003

BSNT_00917___   1004 CTTCCATTATGAATAACTTGCCGACTGTTATGATTGACGC-ATTGGCTAT   1052
                     |.||..|.|||||.||..|.||.|||||..|.|||||.|| ||| ||.||
BPUM_0303___a   1004 CCTCTGTCATGAACAATCTACCTACTGTGTTAATTGATGCGATT-GCAAT   1052

BSNT_00917___   1053 TGCCGG---TACAGACACA-CATGGGATGATGAGAGAAGCGCTT-ATTTA   1097
                        |||   |||||||||| || ||..|.||||||||.| |.|| |||||
BPUM_0303___a   1053 ---CGGACATACAGACACAGCA-GGCGTCATGAGAGACG-GATTAATTTA   1097

BSNT_00917___   1098 TGCAAATGTGATCGGTTCAGATTTAGGGCCTAAAATAACACCGATTGGTT   1147
                     |||.|||||.|||||.|||.|..|.||.||.|||||.||.||.||.||.|
BPUM_0303___a   1098 TGCCAATGTCATCGGCTCAAACCTTGGTCCGAAAATGACCCCAATCGGCT   1147

BSNT_00917___   1148 CCTTGGCGACATTATTATGGCTTCATGTTCTTTCGCACAAAGGTATGAAG   1197
                     |.|||||||||||..|.|||||||||||||||..|.|.|||||..|..|.
BPUM_0303___a   1148 CATTGGCGACATTGCTGTGGCTTCATGTTCTTAAGAAAAAAGGCGTCCAT   1197

BSNT_00917___   1198 ATTTCCTGGGGCACGTATTTTAAAACAGGAATTATCCTCACGATACCC--   1245
                     ||.||.|||||..|.||..|.|||.|.||||||||||||||.|| |||  
BPUM_0303___a   1198 ATCTCTTGGGGGGCATACATGAAAGCCGGAATTATCCTCACCAT-CCCGA   1246

BSNT_00917___   1246 -----------ACTTTATTGATCACACTTGTCGGCCTGTATATTTGGCT-   1283
                                |||||||||            ||..|.|||.|.|||.| 
BPUM_0303___a   1247 CCTTGATCCTTACTTTATTG------------GGGTTATATGTGTGGTTA   1284

BSNT_00917___   1284 --GCTGATAATCCATTCTTGTTTCTAA   1308
                       |||||||   |||         |||
BPUM_0303___a   1285 TGGCTGATA---CAT---------TAA   1299


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