Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00597 and BPUM_0304
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:23
# Commandline: needle
# -asequence dna-align/BSNT_00597___yckA.1.24716.seq
# -bsequence dna-align/BPUM_0304___yckA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00597___yckA-BPUM_0304___yckA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00597___yckA-BPUM_0304___yckA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00597___yckA
# 2: BPUM_0304___yckA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 732
# Identity: 481/732 (65.7%)
# Similarity: 481/732 (65.7%)
# Gaps: 105/732 (14.3%)
# Score: 1553.5
#
#
#=======================================
BSNT_00597___ 1 -------ATGATCAATAGCATTCAATGGGAATATATTTTCAA-----CAC 38
|| |||||.|..||||||||.||.|| ||
BPUM_0304___y 1 GTGGGAGAT----------ATTCATTTAGAATATATATTTAATCCTGCA- 39
BSNT_00597___ 39 GAAGCTG--------GTCATTGAATCGTTCCCTTATGTCATAAAAGGCAT 80
||| ||||| ||||.|| ||||||.||||||||
BPUM_0304___y 40 ----CTGGCAAAGGCGTCAT-------TTCCATT-TGTCATGAAAGGCAT 77
BSNT_00597___ 81 -TGGGTATACACTGCTCATCTCTTTTGTAAGCATGTTTGCAGGAACTGTG 129
|||.| .||.||||||||.||.|||||.|||||||||...||.||..|.
BPUM_0304___y 78 CTGGCT-GACGCTGCTCATTTCCTTTGTGAGCATGTTTTTTGGTACCATT 126
BSNT_00597___ 130 ATCGGCCTGTTCATATCACTCGCTAGAATGTCTAA-----GCTTGCTTTG 174
.|.|||.|.||.||..|.||.||.||||||.|.|| |..|||||||
BPUM_0304___y 127 CTTGGCTTTTTTATTGCGCTTGCCAGAATGGCGAATACGTGGATGCTTTG 176
BSNT_00597___ 175 TTAAGATGGCCGGCGAAGCTCTATATCTCATTTATGCGGGGCGTTCCGAT 224
|.| |||.||...|.|.|||||||||||.|||||.|||||.||.||
BPUM_0304___y 177 ----GCT-GCCTGCACGGTTGTATATCTCATTCATGCGCGGCGTGCCCAT 221
BSNT_00597___ 225 TTTAGTGATTTTGTTTATCCTTTATTTCGGGTTTCCTTATATCAGCATTC 274
|.||||.|||||||||||.||||||||.||.||.|||||.||..|.|||.
BPUM_0304___y 222 TCTAGTAATTTTGTTTATTCTTTATTTTGGATTCCCTTACATTGGGATTG 271
BSNT_00597___ 275 AATTTTCCGCTGTCACGGCTGCTTTAATCGGTTTTAGCCTTAACAGCGCC 324
|.|||.|.||.||.||.|||||..|.||.||.||||||.|.||.|||||.
BPUM_0304___y 272 AGTTTACAGCGGTGACTGCTGCCATTATTGGATTTAGCTTCAATAGCGCT 321
BSNT_00597___ 325 GCCTACATTGCGGAAATTAACCGTTCAGCCATTTCATCCGT--CGAAAAA 372
|||||.|||||.|||||.||.||..|.||..|.||.||.|| ||
BPUM_0304___y 322 GCCTATATTGCAGAAATCAATCGAGCGGCTCTCTCCTCTGTGCCG----- 366
BSNT_00597___ 373 GGACAGTGG-------GAAGCCGCATCCTCGCTGGGTCTTTCCTATTGGC 415
||||| |||||.||....||.||.|||||...||||||||
BPUM_0304___y 367 ----AGTGGACAAGTAGAAGCTGCCAAGTCACTAGGTCTCAGCTATTGGC 412
BSNT_00597___ 416 AGACGATGAGGGGCATCATTTTGCCGCAATCGATACATATTGCGCTGCCT 465
|.||||||.|.||..||||||||||.|||||..|.|..||.||.||.||.
BPUM_0304___y 413 AAACGATGCGTGGTGTCATTTTGCCTCAATCCGTTCGCATCGCACTACCG 462
BSNT_00597___ 466 CCGCTTGCCAATGTATTGCTCGACTTAATCAAGGCGTCCTCTCTCGCTGC 515
||.||.||||||.|..|||||||.||||||||.||.|||||.||.|||||
BPUM_0304___y 463 CCACTAGCCAATATCATGCTCGATTTAATCAAAGCCTCCTCACTGGCTGC 512
BSNT_00597___ 516 GATGATTACAGTGCCGGAATTGCTCCAGCATGCGAAAATCATCGG-GGGC 564
.||||||||.||.||.||..||.|||||||.||.||||||.|.|| ||||
BPUM_0304___y 513 AATGATTACTGTACCCGAGCTGTTCCAGCAAGCAAAAATCGTAGGTGGGC 562
BSNT_00597___ 565 AGAGAGTTTGATTATATGACCATGTATATTCTGACCGCTCTCATTTATTG 614
|.||.||.|||||||||||.|||||||||.||..|||.||||||||.||
BPUM_0304___y 563 -GCGAATTCGATTATATGACGATGTATATTTTGGTCGCCCTCATTTACTG 611
BSNT_00597___ 615 GGCCATCTG---------CTCCATTGCCGCGGTCTTTCAGAATATCCTTG 655
||.|||.|| || |||||| |||||.|..| ||.
BPUM_0304___y 612 GGGCATTTGTAGTGTAGTCT-CATTGC--------TTCAGGACTT--TTT 650
BSNT_00597___ 656 AGAAAAAATACGCTCAT------TATGTTTAA 681
|||||| ||||| || |||.|.|||
BPUM_0304___y 651 AGAAAA---ACGCT-ATGCCAAATATCTGTAA 678
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