Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00599 and BPUM_0305

See Amino acid alignment / Visit BSNT_00599 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:23
# Commandline: needle
#    -asequence dna-align/BSNT_00599___yckB.1.24716.seq
#    -bsequence dna-align/BPUM_0305___yckB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00599___yckB-BPUM_0305___yckB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00599___yckB-BPUM_0305___yckB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00599___yckB
# 2: BPUM_0305___yckB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity:     617/914 (67.5%)
# Similarity:   617/914 (67.5%)
# Gaps:          91/914 (10.0%)
# Score: 2008.5
# 
#
#=======================================

BSNT_00599___      1 GTGA--------AATCATTCAAGCAATCCAAAGCCGTTATATTCAGTTTC     42
                     .|||        .|||||..||  ||||           .|||..|.|  
BPUM_0305___y      1 ATGAGTCGTTTTTATCATAGAA--AATC-----------GATTTGGGT--     35

BSNT_00599___     43 ACAATG------------GCTTTCTTTCTTATATTGGCAGCCTGTTCCGG     80
                       ||||            ||||||.|.|||.|.|||.|.||.||  |.|.
BPUM_0305___y     36 --AATGCTTGTTGTGTCTGCTTTCATACTTGTCTTGTCTGCTTG--CAGT     81

BSNT_00599___     81 CAAAAATGAAGC--------------CGATTCCAAGGATACAGGCTGGGA    116
                     |   |||.|.||              .|||||.|||         |||||
BPUM_0305___y     82 C---AATCAGGCTCTTCTCAGTCTGGAGATTCAAAG---------TGGGA    119

BSNT_00599___    117 GCA-AATCAAGGACAAAGGGAAAATCGTAGTCGCTACATCAGGTACGCTC    165
                     ..| |.|||| .|.|||||||||||.||.||.|||||.|||||.||.||.
BPUM_0305___y    120 TAAGATTCAA-AAGAAAGGGAAAATTGTTGTTGCTACTTCAGGCACCCTT    168

BSNT_00599___    166 TACCCCACTTCTTATCACGATACTGACTCA-GGCTCCGATAAGCTGACGG    214
                     ||.||.||.||.|||||||||||.| ||.| |||...|||.|..||||.|
BPUM_0305___y    169 TATCCAACGTCATATCACGATACCG-CTAATGGCAAGGATCAATTGACTG    217

BSNT_00599___    215 GCTACGAGGTTGAAGTTGTTCGTGAAGCGGCAAAACGCCTGGGACTGAAG    264
                     |.||.||.||.|||||.||....|||||....||||||||.|...|.||.
BPUM_0305___y    218 GTTATGAAGTGGAAGTAGTCAAAGAAGCATTTAAACGCCTTGATGTAAAA    267

BSNT_00599___    265 GTTGAGTTCAAGGAGATGGGCATTGACGGGATGCTGACAGCGGTGAACAG    314
                     ||.||.||.||.||.||||||..|||.||.|||||||..||..|.||...
BPUM_0305___y    268 GTAGAATTTAAAGAAATGGGCTATGATGGCATGCTGAGCGCCATTAATTC    317

BSNT_00599___    315 CGGACAGGTTGACGCAGCCGCGAATGACATCGATGTGACGAAGGACCGCG    364
                     .||.||.||.||.||.||.||.|||||||||||..|.||..|.|||  .|
BPUM_0305___y    318 TGGTCAAGTGGATGCCGCTGCAAATGACATCGACATCACAGATGAC--AG    365

BSNT_00599___    365 AGAAG--AAGTTCGCATTTTCTACTCCATATAAATATTCATACGGTACGG    412
                     |.|||  ||||||||.|||||.|||||.||||||||||||||.||.||||
BPUM_0305___y    366 AAAAGATAAGTTCGCCTTTTCGACTCCTTATAAATATTCATATGGCACGG    415

BSNT_00599___    413 CAATTGTCCGAAAAGACGATTTATCAGGGATTAAAACGCTTAAGGATTTA    462
                     |.||.||..|||||||||||||.||.||.|||||||||.|.||.||||||
BPUM_0305___y    416 CGATCGTAAGAAAAGACGATTTGTCTGGCATTAAAACGTTAAAAGATTTA    465

BSNT_00599___    463 AAAGGGAAGAAAGCGGCTGGCGCGGCTACAACCGTCTACATGGAGGTCGC    512
                     |||||.||||||||.|||||.||.||.|||||..|.||||||||.|||||
BPUM_0305___y    466 AAAGGAAAGAAAGCAGCTGGTGCTGCCACAACGATTTACATGGATGTCGC    515

BSNT_00599___    513 GAGAAAATACGGCGCCAAAGAAGTGATTTATGATAATGCGACGAATGAGC    562
                     ..|.||.|||||.||.||.|||||.||||||||.||||||||.||.||||
BPUM_0305___y    516 TCGCAAGTACGGTGCGAAGGAAGTCATTTATGACAATGCGACAAACGAGC    565

BSNT_00599___    563 AATATTTAAAAGATGTTGCCAACGGACGCACTGACGTCATTTTAAACGAC    612
                     ||||.|||||.||||||||.|||||.||.||.||.||||||.||||.||.
BPUM_0305___y    566 AATACTTAAAGGATGTTGCTAACGGTCGTACAGATGTCATTCTAAATGAT    615

BSNT_00599___    613 TATTACCTGCAGACACTTGCGCTCGCGGCATTCCCGGATCTCAACATTAC    662
                     ||||||.||||||||||.|||||.||.|||||||||.|..|.||.|||||
BPUM_0305___y    616 TATTACTTGCAGACACTAGCGCTAGCTGCATTCCCGAAATTAAATATTAC    665

BSNT_00599___    663 AATTCATCCTGACATCAAGTACATGCCGAACAAACAGGCCCTTGTCATGA    712
                     .|||||.||||||.|.||.||||||||.|||.||||.|...||||.||||
BPUM_0305___y    666 GATTCACCCTGACTTAAAATACATGCCAAACGAACAAGGTTTTGTGATGA    715

BSNT_00599___    713 AAAAA---AGCAATGAGGCACTTCAGAAAAAGA--TGAACGAAGCATTGA    757
                     |.|||   |.||..|||   ||||  |||||||  |.||.|..|..||.|
BPUM_0305___y    716 AGAAAGACAACACAGAG---CTTC--AAAAAGAATTAAATGGTGTCTTAA    760

BSNT_00599___    758 AAGAGATGAGCAAGGATGGCTCTTTGACTAA-ACTGTCGAAACAATTCTT    806
                     |.||.||||..||.||.||..|..|||..|| |.|..||||| |||||||
BPUM_0305___y    761 AGGACATGAAAAAAGACGGAACCATGAAAAAGATTTCCGAAA-AATTCTT    809

BSNT_00599___    807 CAATAAAGCAGATGTATCAAAAAAAATTGATGCCGACGTTCAGGACGTTG    856
                     .|||.|.|||||.||.|||||.|||||.|||||.||.||..|.||.||.|
BPUM_0305___y    810 TAATCATGCAGACGTCTCAAAGAAAATAGATGCTGATGTCGAAGATGTCG    859

BSNT_00599___    857 --ATTTGTAA----    864
                       ||||..||    
BPUM_0305___y    860 ACATTTCGAAATAA    873


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.