Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00602 and BPUM_0306

See Amino acid alignment / Visit BSNT_00602 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:23
# Commandline: needle
#    -asequence dna-align/BSNT_00602___yckD.1.24716.seq
#    -bsequence dna-align/BPUM_0306___yckD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00602___yckD-BPUM_0306___yckD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00602___yckD-BPUM_0306___yckD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00602___yckD
# 2: BPUM_0306___yckD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity:     205/399 (51.4%)
# Similarity:   205/399 (51.4%)
# Gaps:         135/399 (33.8%)
# Score: 512.5
# 
#
#=======================================

BSNT_00602___      1 ATGAAACGAATAA----CCATTAACATCATAACAATGTTCATTGCAACG-     45
                     ||||||.||||||    |                .|||||||...|.|| 
BPUM_0306___y      1 ATGAAAAGAATAAGTGGC----------------TTGTTCATATTATCGG     34

BSNT_00602___     46 ----ACTGTCATTTCTCTGACCGGT------------ACAGCTGAGGCCG     79
                         .||||        ||.|||||            ||||||.|.|   
BPUM_0306___y     35 TGATGCTGT--------TGTCCGGTTTTTATATGGAAACAGCTCATG---     73

BSNT_00602___     80 CTGAAAAACA--------GCAGCAGCCTCC-----CGCA--AATGTTACA    114
                       ||.|||||        |.|..|||.|||     ||||  || ||.|.|
BPUM_0306___y     74 --GAGAAACACCTCAAATGGAAAAGCGTCCAGTAACGCATCAA-GTAAAA    120

BSNT_00602___    115 CT---GACAGATCAGC-AAAAGAAAGAGGTTGAACAACTGGAAGCAG-AG    159
                     ||   ||||||.||.| ||||.|||    |||||...||.| ||||| |.
BPUM_0306___y    121 CTAACGACAGAACAACAAAAACAAA----TTGAAACGCTTG-AGCAGCAA    165

BSNT_00602___    160 ATTCTTAAAAAGCGCAAAGACGTAATCTCA-AAGTATGTACAATACGGTG    208
                     ||||||...||.||.|||||.||.|| |.| |||||.||.|||||.||||
BPUM_0306___y    166 ATTCTTTCTAAACGAAAAGAAGTGAT-TGAGAAGTACGTCCAATATGGTG    214

BSNT_00602___    209 TCCTGCCTAAAGAAAGAGGAGAACACATTAAAAATCACTTGG--------    250
                     |..|..|.||.|||..|||...|||.||||..||.|...|||        
BPUM_0306___y    215 TGTTAACAAAGGAACAAGGTACACATATTACGAAACGAATGGATGAGCAT    264

BSNT_00602___    251 -ACAAACACTTTGAAATGATGAAACAAAACGGCTTTGTT-----------    288
                      ||||.|| ||||||      ||||  |||||.||||||           
BPUM_0306___y    265 TACAATCA-TTTGAA------AAAC--AACGGATTTGTTCCATTGCTGAA    305

BSNT_00602___    289 ----CCAAAGCACCATCCTCATCCGCATAAATTTGAAAAAAGACATTAA    333
                         |||.|||||||||..|     |||||                   
BPUM_0306___y    306 AAAACCACAGCACCATCGAC-----CATAA-------------------    330


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