Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00609 and BPUM_0310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:24
# Commandline: needle
# -asequence dna-align/BSNT_00609___nin.1.24716.seq
# -bsequence dna-align/BPUM_0310___nin.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00609___nin-BPUM_0310___nin.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00609___nin-BPUM_0310___nin.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00609___nin
# 2: BPUM_0310___nin
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 474
# Identity: 223/474 (47.0%)
# Similarity: 223/474 (47.0%)
# Gaps: 162/474 (34.2%)
# Score: 446.0
#
#
#=======================================
BSNT_00609___ 1 TTGATCAAATCATGGAAGCCGCAAGAACTT-------------------T 31
||| ||.||||| |
BPUM_0310___n 1 -----------ATG--------AATAACTTAAACCAAGCCTATTCCCTAT 31
BSNT_00609___ 32 CGATTTCATATCATCAATTTACTGTATTTCA--------AAAGGATTCTA 73
|.||.||.|||||.|||.|.||.||| |.|| ||| |
BPUM_0310___n 32 CTATCTCCTATCACCAAATCACCGTA-TACACCGGAAGTAAA-------A 73
BSNT_00609___ 74 CACCTCCTATAATGGATTGGACTGACGAAGCGATTGAAAAAGGAT----- 118
|.||.|||.|.||.||.|||.|.||.||.|..|||....||||||
BPUM_0310___n 74 CGCCACCTGTGATTGACTGGTCAGATGATGACATTCTTCAAGGATTCGCC 123
BSNT_00609___ 119 ATACTGCGGCAG---ACGGAGCCATTTCATTTGAGGCACAGCGA-----A 160
|| ||.|| |.||.| |.||.||||| ||.|| |
BPUM_0310___n 124 AT-----GGGAGATCAGGGTG---TGTCCTTTGA-----AGGGATCAACA 160
BSNT_00609___ 161 ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAA- 209
|...|||.||||.|.|| ||.|| |||..||||
BPUM_0310___n 161 ACGGAAAAGCCTCTGTT-------------ACTGT-----AACTTTAAAT 192
BSNT_00609___ 210 --------CTCCTAC-----------GAAAAAAAAGTGACTGTTCCTTTT 240
|||| | ||.|.||...|.||..|.||||||
BPUM_0310___n 193 AACGATATCTCC--CCAGCCTCGGCTGACAGAACGATCACAATACCTTTT 240
BSNT_00609___ 241 ---CATGTCACAGAAAACGGAA-TTCATATTGAAAGCATTATGTCTAAGA 286
|||| || ||..|.| || ||.||||...||||.|.|||.||.||.
BPUM_0310___n 241 ACGCATG-CA-AGTGACC--AAGTTTATATCACAAGCGTCATGGCTCAGG 286
BSNT_00609___ 287 GACTGTCCTTTGATCTGCCTAAAGGAGACTATCAATTGACATGCTGGACT 336
..|||||.||...|.|.||.||.|||||||||||..|.||.||||..|||
BPUM_0310___n 287 TGCTGTCTTTCCCTATACCAAAGGGAGACTATCAGCTCACCTGCTACACT 336
BSNT_00609___ 337 ------GTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTAT 380
..|||.|.|||| |||..||||..|||
BPUM_0310___n 337 ACACAGCAGCCTGATGAA------------------GACCTTTATCATAT 368
BSNT_00609___ 381 TGATGCTGTTT-----CTGTGTAA 399
|..||| |.|||||.
BPUM_0310___n 369 -----CCATTTCCAAACGGTGTAG 387
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