Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00633 and BPUM_0326
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:25
# Commandline: needle
# -asequence dna-align/BSNT_00633___ycxD.1.24716.seq
# -bsequence dna-align/BPUM_0326___ycxD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00633___ycxD-BPUM_0326___ycxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00633___ycxD-BPUM_0326___ycxD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00633___ycxD
# 2: BPUM_0326___ycxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1521
# Identity: 859/1521 (56.5%)
# Similarity: 859/1521 (56.5%)
# Gaps: 369/1521 (24.3%)
# Score: 2142.0
#
#
#=======================================
BSNT_00633___ 1 ATGGAGAAATAT-ATGAG-----TCT---ATTAATGAGGATAGAGGAGAT 41
.||..||||||| ||.|| ||| .||| |.||||.||||
BPUM_0326___y 1 GTGAGGAAATATGATCAGCTTGTTCTCAGCTTA------AAAGAGAAGAT 44
BSNT_00633___ 42 GA-------TGCAAAGCA--CCGCCTATCAAGAAGGAGACAGGCTTCCAT 82
|| ||.|.|.|| |.|.| ||.|||| |.||.|
BPUM_0326___y 45 GACGTCTGGTGAATACCATGCGGGC-ATGAAGA-----------TCCCTT 82
BSNT_00633___ 83 CTATCCGTCAGCTGTCCGCCCGCTACCAAGTCAGCAAAAGCACAGTGATC 132
|.||.||.||..||.|.||.|..||...|.|.||||||||||||||.||
BPUM_0326___y 83 CCATTCGCCATTTGGCGGCACAATATGCATTGAGCAAAAGCACAGTTAT- 131
BSNT_00633___ 133 CGCGCGCTGCAGGAGCTGGAAAAGC----GCCACCTTA------------ 166
.||||| |.|||.|||
BPUM_0326___y 132 -------------------TAAAGCATTAGACACATTAGAACGAGAACAT 162
BSNT_00633___ 167 ----TCTATTCTGTTCCGAA--AAGCGGCTATTATATTGTGAA---AAAG 207
|.|||||||| .||| |||||||||.|||.|.||||| ||||
BPUM_0326___y 163 CTGCTGTATTCTGT--AGAAAGAAGCGGCTACTATGTCGTGAAAACAAAG 210
BSNT_00633___ 208 ACA-------GGGAAATCAAGAAGCGGGCAGCCTGGCCCCATCGACTTTG 250
|| |||| ||||.|...||| |.||| ||.||.||||
BPUM_0326___y 211 -CAGTTATCGGGGA----AAGAGGATAGCA-CATGG----ATTGATTTTG 250
BSNT_00633___ 251 CCACATCTGCGCCGGATCCAGATGTGTTTCCGTATCTTGATTTTCAGCAC 300
|..|||||||.||.|||||.|..||||||||.|||.|||||||.||||||
BPUM_0326___y 251 CTTCATCTGCACCTGATCCCGTCGTGTTTCCATATGTTGATTTCCAGCAC 300
BSNT_00633___ 301 TGTATCAACAAAGCGATTGATACATACAAAAACGATTTGTTTATTTATGG 350
||.||||||.||||.||.|||...||..||||.||.|||||||||||.||
BPUM_0326___y 301 TGCATCAACCAAGCCATCGATTTGTATCAAAATGACTTGTTTATTTACGG 350
BSNT_00633___ 351 GACGCCAAAGGG---------GCTTCCCTCACTCATCCGCGTACTCCGAA 391
.||..|.||.|| |||.|...||.|||| |.|| |
BPUM_0326___y 351 TACAACCAACGGATTACCATCGCTGCTGCCAGTCAT-----TTCT----A 391
BSNT_00633___ 392 AGC---TCTTGGCCACTCAACAGGTATTTGCGGATGAACGGCATATTTTC 438
||| |..||| .|.|.||.||.|||||..||..|..|||.||..|.
BPUM_0326___y 392 AGCGATTAATGG---ATTATCAAGTGTTTGCTAATCCAGAGCAGATCGTT 438
BSNT_00633___ 439 ATTACATCAGGTGTCCAGCAGGCGTTATCCTTGCTTT--GTGCCATGCCG 486
||.||.||.|||.|.||||.|||.||||||.| ||| |..||||.||.
BPUM_0326___y 439 ATGACCTCTGGTATTCAGCTGGCATTATCCAT--TTTAAGCACCATCCCT 486
BSNT_00633___ 487 TTCCCAAATGGGAAAGAGAAGATCGCCA------TTGAACAGCCGGGCTA 530
||.||.|||||.|||.||| ||| |.||||||||.|||||
BPUM_0326___y 487 TTTCCGAATGGCAAACAGA------CCATACTAGTCGAACAGCCAGGCTA 530
BSNT_00633___ 531 CCA----------------TTTGATGGTCGAA-----CAGCT---TGAGA 556
.|| ||.|| || ||.|| ||.||
BPUM_0326___y 531 TCACCTATACCTTCAATATTTAGA------AAAAAATCAACTTCCTGTGA 574
BSNT_00633___ 557 CGCTTGGGATTCCCGCTATCGGGGTGAAACGAACGGAAGAAGGG-CTTGA 605
|.||||||| |.||.|||||| ||||| .||||
BPUM_0326___y 575 ---TGGGGATTC---------------AGCGGACGGAA-AAGGGAATTGA 605
BSNT_00633___ 606 TATAGCCGAGGTTGAGCGGTTATTTCAAACAGAATCGATTAAATTTTTTT 655
|.|....||..|.|||||..|.||||.|..||||..||||...|||||.|
BPUM_0326___y 606 TCTTCAAGAATTGGAGCGCATCTTTCGAGAAGAAGAGATTCGTTTTTTCT 655
BSNT_00633___ 656 ATACGATGCCGCGCTTCCATAACCCGCTTGGCTACTCA------TTGTCA 699
||||||||||..|.||.||.|||||.||||| | ||||||
BPUM_0326___y 656 ATACGATGCCAAGGTTTCAAAACCCCCTTGG------AACGAGCTTGTCA 699
BSNT_00633___ 700 GAGCGTGATAAACAGGAGC--TTGTGAG-ACTGGCAGAAGCGTATGATGT 746
.|.|..||.|| |.|||| ||| .|| .||.||.|||...||.||.||
BPUM_0326___y 700 AAACAAGAGAA--AAGAGCGATTG-CAGCTCTTGCCGAAAAATACGACGT 746
BSNT_00633___ 747 CTATCTCGTTGAGGATGATTACCTCGGTGATCTGGAGGAAAAT------- 789
||||.|||||||.||||||||..|.|..|||.| |.|||
BPUM_0326___y 747 CTATATCGTTGAAGATGATTATATAGCCGATTT-----AGAATTTGATGC 791
BSNT_00633___ 790 AAAAAGGCAGATCCGCTGTACGCATATGATCTGTCCTCACATGTCATCTA 839
|||||| |||.|||.|.||..||||.||||.|.|...|.|.|||||.||
BPUM_0326___y 792 AAAAAG--AGACCCGATCTATTCATACGATCAGGCGGGAAAGGTCATTTA 839
BSNT_00633___ 840 TTTGAAAAGCTTCTCGAAAATGATGTTCCCCGGCCTTCGCGTGGGGGCGG 889
|||.|||||||||||.|||||.||.||.||.||.|||||....||.||.|
BPUM_0326___y 840 TTTAAAAAGCTTCTCCAAAATCATTTTTCCAGGACTTCGAACAGGAGCAG 889
BSNT_00633___ 890 CTGTTTTGCCCGAAGCGCTGACTGACACGTTCTATGCGTACAAAAA--GC 937
..||.||.||.||.|..|| |.|.|..|.||.|| |||.|||.||| ||
BPUM_0326___y 890 TCGTCTTACCTGAGGAACT-AATTAGTCCTTTTA-GCGAACACAAACGGC 937
BSNT_00633___ 938 TGAACGACATCGACTGTTCGATGATTTCTCAAGCGGCATTGGAGATTTAC 987
|.|..|||||||||.|.||.|||.|.||.||.||.||.||.||.||.|||
BPUM_0326___y 938 TCATTGACATCGACAGCTCCATGCTGTCACAGGCAGCCTTAGAAATATAC 987
BSNT_00633___ 988 CTGAAAAGCGGTATGT----ACGGCAGGCATAAGGAGAAAATCAGAGATT 1033
.||||||||||.|||| ||||| ||| |||
BPUM_0326___y 988 TTGAAAAGCGGGATGTTTGAACGGC---------------ATC-GAG--- 1018
BSNT_00633___ 1034 CTTATAAAGA--GCGGTCGCTGAAGCTTCAT--CAAGCCATTCAAACA-- 1077
||||| ||.|.| ||.|| || |||.|.||.||||||
BPUM_0326___y 1019 -----AAAGAATGCAGAC----AACCT--ATCGCAATCGATCCAAACAGC 1057
BSNT_00633___ 1078 ----CACAGGCAGCTGGGAAGCG-----GCCGCTTTACGTTCTCC----- 1113
.|||.|| |||..||||| ..||||| .||..|
BPUM_0326___y 1058 TAGTGACATGC--CTGAAAAGCGATCAAATCGCTT----ATCAACTAGGA 1101
BSNT_00633___ 1114 --AGCGG-GCAGGC-ACCCTGCATGCACACCCACCTGGTGC--------- 1150
||.|| ||.||| || .|||.||||...|| ||..|
BPUM_0326___y 1102 GAAGAGGAGCCGGCTAC---TCATACACATGTAC--GGATCGATCGGTCA 1146
BSNT_00633___ 1151 -TTCCTCAGGATCTGCCCGCCTCAAGAGTGATTCA-TAGACTGAAAAAAC 1198
|||| |||...||.|| |.||||| .|| ||.|||||
BPUM_0326___y 1147 ATTCC----GATGAACCAGC--------TCATTCAGCAG-CTAAAAAA-- 1181
BSNT_00633___ 1199 AAGGG-----GTTCTCC-TTGAGGCGATAGACCGTCATTATTTATCAGA- 1241
|| ||| ||| ||.||.|.||.||.||.||||||.|.|| ||
BPUM_0326___y 1182 ---GGCATCTGTT-TCCATTCAGTCAATCGATCGCCATTATCTTTC-GAC 1226
BSNT_00633___ 1242 TTATCAGAAAGA---AAATCT--ATTAAAAATCAATATTTCCAATGTGAA 1286
.|||||.||||| .|.||| ||| |.||.||||...|||||||
BPUM_0326___y 1227 CTATCAAAAAGACCCCATTCTTCATT-----TGAACATTTGGCATGTGAA 1271
BSNT_00633___ 1287 AACGGAAG---ATATTGAGCGCGGTGTCAAGCTGTTGATGAGC--CATTT 1331
| |||| |.||....||.||.|||.|..||||.|.|| | |||||
BPUM_0326___y 1272 A---GAAGAGCAAATCACACGTGGAGTCGATTTGTTAAAGA-CAGCATTT 1317
BSNT_00633___ 1332 --------------ATAA--- 1335
|||.
BPUM_0326___y 1318 CAGCAAATTGGGCGATATTAA 1338
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