Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00637 and BPUM_0329

See Amino acid alignment / Visit BSNT_00637 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:25
# Commandline: needle
#    -asequence dna-align/BSNT_00637___yczE.1.24716.seq
#    -bsequence dna-align/BPUM_0329___yczE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00637___yczE-BPUM_0329___yczE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00637___yczE-BPUM_0329___yczE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00637___yczE
# 2: BPUM_0329___yczE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 695
# Identity:     451/695 (64.9%)
# Similarity:   451/695 (64.9%)
# Gaps:          97/695 (14.0%)
# Score: 1394.5
# 
#
#=======================================

BSNT_00637___      1 GTGAAGCAAGAACTTGTTCTGCGCTGGACATTTTATTTTGCCGGTTTGAT     50
                     .||||||..||||.|.||.|.||.|||...||||||||||..||.|||||
BPUM_0329___y      1 TTGAAGCGGGAACATCTTTTACGTTGGTTTTTTTATTTTGTTGGATTGAT     50

BSNT_00637___     51 CATTTTGGCTTTTGGTGTATCCCTGACGATAGAAGGAAAAGCACTCGGCA    100
                     |.|..|.||||||||..||||.|||||..|..|||||||....||.||.|
BPUM_0329___y     51 CGTACTAGCTTTTGGACTATCACTGACAGTGAAAGGAAAGATTCTTGGGA    100

BSNT_00637___    101 TTAGTCCGTGGGATGCATTTCATTACAGCCTGTTTCAGCACTTCGGGCTT    150
                     ||.||||.|||||.||.||.||||||.|.|||||||||||.||.||.||.
BPUM_0329___y    101 TTGGTCCTTGGGACGCTTTCCATTACGGACTGTTTCAGCATTTTGGACTG    150

BSNT_00637___    151 ACCGTCGGCCAGTGGTCCATCATTATTGGAGCGCTCATCGTCGGATTCAC    200
                     ||..|.||.||||||||||||||||||||.||.|||||.||...|.|.||
BPUM_0329___y    151 ACGATTGGACAGTGGTCCATCATTATTGGTGCACTCATTGTGACACTAAC    200

BSNT_00637___    201 GTCATTGTTTACGAGAGCTTGGCCGAAAATTGGGGCCCTCCTGAATATGG    250
                     .||..|.|||||||.|.|.|..||.||.||.||.||..|.|||||.||||
BPUM_0329___y    201 TTCTGTTTTTACGAAATCATTTCCAAAGATCGGCGCATTACTGAACATGG    250

BSNT_00637___    251 TGCTCATTGGTGTATTTATAGATTTTTTCAAT----TTCATTCTGCCTGC    296
                     ||||.||||||.|.|||||||||||.||.|||    |  ||  |||||||
BPUM_0329___y    251 TGCTGATTGGTATGTTTATAGATTTCTTTAATGCGGT--AT--TGCCTGC    296

BSNT_00637___    297 CCCCTCGAC--------CTACACAGGCTCGATCATCGTCTTCTCTCTA--    336
                     .||    ||        .|||.|  |||..|| || ||.||     ||  
BPUM_0329___y    297 ACC----ACATGGGTATTTACCC--GCTTTAT-AT-GTGTT-----TATT    333

BSNT_00637___    337 ---GGCGTGGTGCTGATT--GGTTACGGCGTCGGTGTTTATGTATCAGCA    381
                        |||||.|||  |.||  ||.||.||.||.||..|||||||.||.||.
BPUM_0329___y    334 ACGGGCGTTGTG--GTTTCAGGATATGGTGTTGGCATTTATGTCTCCGCG    381

BSNT_00637___    382 GGCCTTGGCGCGGGGCCGCGTGATTCACTGATGATGCTGATTACAGAAAA    431
                     ...||||||||.|||||..|.||||||.|.|||.|.||.||..|||..||
BPUM_0329___y    382 AATCTTGGCGCCGGGCCAAGAGATTCATTAATGCTCCTCATCTCAGCGAA    431

BSNT_00637___    432 AACCGGCTGGAATGTGCAATGGGTGCGGAACGGCATGGAATTAACCA---    478
                     |||.||.|.|||.|||||.||||||||.||.|||||.||.|||| ||   
BPUM_0329___y    432 AACTGGATTGAACGTGCAGTGGGTGCGAAATGGCATTGAGTTAA-CAGTG    480

BSNT_00637___    479 -TTTTGTTTGCGGCATGGGGCATG---GGCGGACCGATCGGTTTTGGCAC    524
                      ||||||||   ||||||   |||   |||||||||||.||..|||||||
BPUM_0329___y    481 CTTTTGTTT---GCATGG---ATGCTCGGCGGACCGATTGGCGTTGGCAC    524

BSNT_00637___    525 CATTTTGACCGCCATCCTCACCGGACTCATTCTGCGTTTTTCATTGCCGC    574
                     .|||.||||.||.||..||||.||.|||.|.||.||.||.||.|||||.|
BPUM_0329___y    525 GATTCTGACGGCTATTTTCACAGGTCTCGTCCTTCGATTCTCTTTGCCAC    574

BSNT_00637___    575 AGTCAA------TCC---AGTTGCTGAATTATGCTGTGGCAAGGCGGACA    615
                     |.||.|      |||   ||.|||| .||||        ||      |.|
BPUM_0329___y    575 AATCGACACGTCTCCTAGAGCTGCT-TATTA--------CA------AAA    609

BSNT_00637___    616 GCCGCTGTGAAAGCATCTCCGCCTGT----ACACTAA--------    648
                     .|.||.|.||||         |||||    ||.||.|        
BPUM_0329___y    610 ACAGCAGAGAAA---------CCTGTTCAGACGCTTATCCGATAA    645


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