Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06060 and BPUM_0347
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_06060___yxeM.1.24716.seq
# -bsequence dna-align/BPUM_0347___yxeM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06060___yxeM-BPUM_0347___yxeM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06060___yxeM-BPUM_0347___yxeM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06060___yxeM
# 2: BPUM_0347___yxeM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 816
# Identity: 571/816 (70.0%)
# Similarity: 571/816 (70.0%)
# Gaps: 42/816 ( 5.1%)
# Score: 1892.5
#
#
#=======================================
BSNT_06060___ 1 ATGAAGATGAAAAAATGGACAGTGCTGGTCGTTGCTGCATTATTAGCGGT 50
|||||.|..|||||.|||..|||..|..|..||||.|||.|..|.||.||
BPUM_0347___y 1 ATGAAAAACAAAAAGTGGCTAGTCATTCTATTTGCAGCAATGCTGGCAGT 50
BSNT_06060___ 51 GCTCTCAGCTTGCGGCAATGGAAAC-AGCAGCAGTAAAG---AGGATGAC 96
..|..||||||||||| ||.||| |.||| ||..||| |.||.||.
BPUM_0347___y 51 TTTAGCAGCTTGCGGC---GGCAACAATCAG-AGCGAAGGCAAAGACGAA 96
BSNT_06060___ 97 AATGTGCTTCATGTCGGTGCGACAGGACAAAGTTACCCATTTGCATATAA 146
||.||..|..|.||.||.||.|||||.|||||.||.||.|||||.|||||
BPUM_0347___y 97 AAAGTATTAAAAGTAGGCGCCACAGGGCAAAGCTATCCGTTTGCTTATAA 146
BSNT_06060___ 147 AGAAAACGGAAAGCTGACAGGCTTTGATGTGGAAGTGATGGAAGCGGTCG 196
|||.||.||.|||||....|||||.|||||.|||||.|..|||||..|||
BPUM_0347___y 147 AGACAATGGCAAGCTTGTTGGCTTCGATGTTGAAGTCACTGAAGCTATCG 196
BSNT_06060___ 197 CTAAGAAAATTGAC-ATGAAACTGGACTGGAAGCTGCTTGAATTCAGCGG 245
|.||||||.|.|.| || |||||.||||||.||||...||||||||||||
BPUM_0347___y 197 CAAAGAAACTCGGCTAT-AAACTAGACTGGCAGCTAAGTGAATTCAGCGG 245
BSNT_06060___ 246 GCTGATGGGAGAGCTTCAAACAGGCAAGCTTGACACCATTTCCAACCAGG 295
.||.|||||..||||...|.|.||.|||||.||.||..|.||.|||||.|
BPUM_0347___y 246 ACTAATGGGGCAGCTGACATCTGGTAAGCTGGATACAGTGTCAAACCAAG 295
BSNT_06060___ 296 TAGCTGTGACAGACGAACGTAAGGAAACGTATAACTTTAC-GAAACCATA 344
|.||.||.|||||.||.|||||..||||||.||||||||| ||.| |.||
BPUM_0347___y 296 TCGCAGTCACAGATGAGCGTAAACAAACGTTTAACTTTACTGATA-CGTA 344
BSNT_06060___ 345 CGCTTATGCGGGAACACAGATTGTCGTCAAAAAAGACAATACTGATATCA 394
|||.|||||.||||||||.||..||||.|||||||||||.|..||.||||
BPUM_0347___y 345 CGCATATGCAGGAACACAAATCATCGTGAAAAAAGACAACAACGACATCA 394
BSNT_06060___ 395 AA--TCAGTAGACGATTTGAAAGGCAAGACAGTCGCAGCCGTTCTCGGTT 442
|| || |.||.|||||.|||||.||.|||||.||.||.|||||.||.|
BPUM_0347___y 395 AAGGTC--TTGATGATTTAAAAGGAAAAACAGTGGCGGCAGTTCTTGGCT 442
BSNT_06060___ 443 CAAACCACGCGAAAAACCTTGAAAGCAAAGATCCTGATAAAAAAATCAAT 492
|.||||||||.||||||.|.||.|||||||||||.||.||||||||||||
BPUM_0347___y 443 CTAACCACGCCAAAAACTTAGAGAGCAAAGATCCGGACAAAAAAATCAAT 492
BSNT_06060___ 493 ATCAAAACGTACGAAACACAAGAGGGTACGCTGAAGGATGTTGCGTACGG 542
||.|||||.||.|||||.|||||.|||....|.||.||.||.||..|.||
BPUM_0347___y 493 ATTAAAACATATGAAACGCAAGATGGTGTCTTAAATGAAGTGGCAAATGG 542
BSNT_06060___ 543 CCGTGTAGACGCTTATGTCAACAGCCGAACTGTATTGATCGCGCAAATCA 592
|||.|||||.||||||||||||.|.||.|.||||||..|.||.|||||..
BPUM_0347___y 543 CCGCGTAGATGCTTATGTCAACGGACGCAGTGTATTACTGGCTCAAATTG 592
BSNT_06060___ 593 AGAAGACCGGTTTGCCATTAAAGCTTGCAGGAGATCCGATTGTTTACGAA 642
|.||.||.|||.|.||..|.||..|||..||..|.||.|||||.||.|||
BPUM_0347___y 593 AAAAAACAGGTCTTCCGCTCAAAATTGTTGGCAACCCCATTGTGTATGAA 642
BSNT_06060___ 643 CAGGTTGCATTCCCATTTGCCAAGGACGATGCGCACGACAAGCTCCGCAA 692
.|.||.|..|.||||||||||||.||..|...|||.||||||||..|..|
BPUM_0347___y 643 GAAGTAGGCTACCCATTTGCCAAAGATAAAAAGCATGACAAGCTAAGAGA 692
BSNT_06060___ 693 AAAAGTCAATAAGGCCCTAGAT----GAATTGCGTAAAGACGGAACACTG 738
|.||.|.||.||.|| ||| |||||..|..|||||||.||||||
BPUM_0347___y 693 AGAATTTAACAAAGC----GATCAAAGAATTAAGAGAAGACGGGACACTG 738
BSNT_06060___ 739 AAAAAACTCTCTGAAAAATACTTTAATGAAGATATCACAGTAGAACAGAA 788
||||||.|.|||||.||.||.||.||.||.|||.||||.||
BPUM_0347___y 739 AAAAAATTGTCTGAGAAGTATTTCAAAGACGATGTCACGGT--------- 779
BSNT_06060___ 789 GC--ATTAA------- 795
|| |||||
BPUM_0347___y 780 GCCAATTAAAAAATAA 795
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