Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06056 and BPUM_0351
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_06056___yxeQ.1.24716.seq
# -bsequence dna-align/BPUM_0351___yxeQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06056___yxeQ-BPUM_0351___yxeQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06056___yxeQ-BPUM_0351___yxeQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06056___yxeQ
# 2: BPUM_0351___yxeQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1533
# Identity: 879/1533 (57.3%)
# Similarity: 879/1533 (57.3%)
# Gaps: 393/1533 (25.6%)
# Score: 2256.5
#
#
#=======================================
BSNT_06056___ 1 -----ATGAGC-AAACAAGGGCTGACAGCAGGTCTT-GCAGAGGCTGTGA 43
||.|.| |||||| || |||||||||||
BPUM_0351___y 1 ATGGAATTAACAAAACAA----------------TTGGCAGAGGCTGT-- 32
BSNT_06056___ 44 GAACGTCACAACCTGAGCATTCAGTTGACGCGATTCACGAAGCA------ 87
.||| ||.|.|||..|..||||.| |.||
BPUM_0351___y 33 -----------ACTG-----TCTGCTGATCCACTTCAAG-ATCATCGGGC 65
BSNT_06056___ 88 ---AAAAAAGGATTACTTGA-------TTTTA----CTGC--------CG 115
|.|||.|| ||.|| |.||| |||| ||
BPUM_0351___y 66 GGTAGAAATGG----CTCGACATGGTCTGTTAGACGCTGCGGCGGCGGCG 111
BSNT_06056___ 116 CTTCATTCGCAG-GAAGAGAAGATAAAGGCATTCAAAAGCTC----CTCC 160
||| ||.| ||| |||.||..||||.|||||||||||| |.|
BPUM_0351___y 112 CTT-----GCTGCGAA-AGAGGACGAAGGAATTCAAAAGCTCATGGCAC- 154
BSNT_06056___ 161 GTCTGATAGAGGATGAAGGAGGC-------CTGCCCCTTGTTCCTATTAT 203
|.|.|||..|||.|||| || |...|||||.|.||
BPUM_0351___y 155 ------TTGTGGAACAAGAAGGCGGAGAAGCT----CAAATTCCTGTCAT 194
BSNT_06056___ 204 CGGACAGGGCAAAAAGGCCGCGCCATTACAATCC---GCGATGCTCAATG 250
||||||.||.|||||||.| .|.|.| |||||| ||||||||.||.|
BPUM_0351___y 195 CGGACAAGGGAAAAAGGTC-AGTCGT--CAATCCGCAGCGATGCTGAACG 241
BSNT_06056___ 251 G---ATTTATCGCCCATGCATTGGATTTTGATGATGTCCATTCCGATGTA 297
| .||.|| |||.||..|.||||.|||||||||.|||||.||.||.
BPUM_0351___y 242 GCTACTTGAT---CCACGCCCTTGATTATGATGATGTGCATTCAGACGTG 288
BSNT_06056___ 298 AGAGGACACCCCAGTGCCGTCATCGTACCGGCCCTTATTGC-ATCTGCCG 346
|||||||||||.|||||.||.|||.|.||.|| ||||| ||| .|.|
BPUM_0351___y 289 AGAGGACACCCAAGTGCGGTGATCATTCCAGC----ATTGCTATC-ACAG 333
BSNT_06056___ 347 CTCGCGGAC----------ATGACGAGCGGCTTCTTGGC-GCTTATGTTG 385
||..|.||| .||.|||.| |.||.||.|| ||.||..|..
BPUM_0351___y 334 CTATCAGACGGAAAAGGGTTTGGCGATC-GATTTTTAGCAGCCTACATCA 382
BSNT_06056___ 386 TTGGTGTTGAAGTGATGGCACGGCTGGGAGAATCAATTGGC--AGCCGCC 433
..||.|||||||||||||||.||||.||.|||||.||.||| ||| .|
BPUM_0351___y 383 CAGGCGTTGAAGTGATGGCAAGGCTTGGCGAATCCATCGGCAAAGC--GC 430
BSNT_06056___ 434 ACTATGAAAAGGGCTGGCATAATACAGGAACGCTTGGTGCTATCGCTGCT 483
|.|||||....||||||||||||||.|||||.|||||.||.||.||.||.
BPUM_0351___y 431 ATTATGAGCGAGGCTGGCATAATACCGGAACCCTTGGAGCCATTGCGGCA 480
BSNT_06056___ 484 GCCTGCGCCGTAGGTTATGCTGAGGAGCTTA----------CTCAGGAAG 523
|..||.|||.|.||.||| ||| |.|||||||
BPUM_0351___y 481 GTATGTGCCATTGGGTAT----------TTAAAAAAGGTCTCACAGGAAG 520
BSNT_06056___ 524 AGCTGGAA--AAAGCAATTGGTTTTGCGGCTACGCAATCTGCTGGGATGA 571
||.| || ||.|||||.||.|||||.|...||||||||||.||.|||.
BPUM_0351___y 521 AGTT--AATGAAGGCAATCGGCTTTGCTGGAGCGCAATCTGCCGGCATGC 568
BSNT_06056___ 572 GGGTGCAATTTGGAACAGAAATGAAACCGCTGCACGCCGGTCTGGCGGCT 621
|...|||.||.||..|.||.||||||||..|.||.|||||..|.||||||
BPUM_0351___y 569 GAAAGCAGTTCGGCTCTGATATGAAACCATTACAAGCCGGCTTAGCGGCT 618
BSNT_06056___ 622 CAG----GCTGGCTTG---CTGGCCGTTAAGCTGGCCCAATCAGAATTTG 664
|| ||||.||.| .||| .||.||||.|| ||||..||||
BPUM_0351___y 619 -AGAACAGCTGTCTGGTCTATGG--ATTTAGCTTGC----TCAGGTTTTG 661
BSNT_06056___ 665 GCGGGTCCCGCA------CGGCACTTGATGGAGAAAC---TGGTTTCTTC 705
||||| | ||...|||||||| .|| |||||||||.
BPUM_0351___y 662 GCGGG------AGTGAATCGATTCTTGATGG---CACGCTTGGTTTCTTT 702
BSNT_06056___ 706 AGTCTGTACGGTGA-------CGTTGAAAAAGCACAACATACTTTGCTAA 748
...||.||.||.|| ||| ||..||..|..|||.|||
BPUM_0351___y 703 TCGCTCTATGGAGATGAGGAGCGT-------GCGGAAAGTCGTTTACTA- 744
BSNT_06056___ 749 ACGATTGG---GGGGCACCGTGGAGAATTGT-GCAGCCGGGTCTATGGTT 794
|||.|| ||..||.|.|||.|.||||| .|| ||.|||||||||||
BPUM_0351___y 745 --GATGGGTATGGTACAACATGGCGTATTGTCTCA-CCAGGTCTATGGTT 791
BSNT_06056___ 795 TAAAATCTATCCATTTTGTTCCGCGGCACACCATGCTGCAGATGCGGTAC 844
.|||.|.|||||.||.|||||.||||||||.|||||.||.|||||..|.|
BPUM_0351___y 792 CAAAGTGTATCCGTTCTGTTCAGCGGCACATCATGCAGCCGATGCAATCC 841
BSNT_06056___ 845 GACAGCTTATCTCCGAAGAAA------CCATTTCTGCTGCCAATACCG-- 886
.|.| |||| |.|||| || ||||| .||||
BPUM_0351___y 842 TATA-CTTA------ATGAAAGAGCATCC-TTTCT--------CACCGGA 875
BSNT_06056___ 887 --------AAC--GTATTGAAGTGATTTTTCCGCCAGGCGGAGATGCTGC 926
||| ||| ||.||..|.||.|||||.|||||||||||.||
BPUM_0351___y 876 GCAGGTGAAACAAGTA--GATGTCCTGTTCCCGCCTGGCGGAGATGCAGC 923
BSNT_06056___ 927 ----ATTGA-CGGAAAGATCTCCAAAAACTGGAGAGGAAGGCCGTTTCAG 971
||||| |||| |.||....||||||||.|||||.||.|||||
BPUM_0351___y 924 GCTTATTGAGCGGA-----CACCTTCGACTGGAGAAGAAGGGCGATTCAG 968
BSNT_06056___ 972 CGTTGAATATGTGATTGCTCTTGC----TTTGCATGGACACGAC-CTGAC 1016
.||.|||||||||||.||.||||| || |||||| ||| |||.|
BPUM_0351___y 969 TGTCGAATATGTGATCGCACTTGCCGCGTT----TGGACA-GACGCTGGC 1013
BSNT_06056___ 1017 CATTGAACATTTT-----AACAGCCAGCCGATCCCAA--ACG-GCAT--- 1055
..|.||....||| ||.|.|.|....|||.||| ||| .|||
BPUM_0351___y 1014 GCTGGATGCCTTTACGAAAAAACCTATTTCATCACAAATACGCACATGGA 1063
BSNT_06056___ 1056 TCAAACGACAATAGGGCATATTCAGCGCGTATATGAC--AATGCTA---- 1099
|.|||| ||| |..||.|.|.||||||| ||.|.||
BPUM_0351___y 1064 TGAAAC-------GGG----TGAAGAGAGGATATGACCAAACGATAGAAC 1102
BSNT_06056___ 1100 CTCAGCCGGCTCCCCATGCCGTTCCAAAAGGCCGTTTCACGATTGT---- 1145
|||| |||..||||.||.||||||||.||.||.||||||||
BPUM_0351___y 1103 CTCA------TCCATATGCTGTCCCAAAAGGTCGCTTTACGATTGTGAAA 1146
BSNT_06056___ 1146 ----CCGGGCCTATTTATCAGACGG-----CCGGATTTGCGAAGCGCGTG 1186
|| ||.||.||.|| || ||..||.|| ||.|
BPUM_0351___y 1147 ATCACC--------TTGTCTGATGGCACCACC--ATCAGCAAA---CGAG 1183
BSNT_06056___ 1187 TGGA----CTGCCCAAAAGGG--GCGCCAGGAAATGAGCTGTCTGAAGAA 1230
|.|| |.|| ||| ||.|||||..|||..||.||..|||||
BPUM_0351___y 1184 TCGATATTCCGC------GGGGAGCACCAGGTCATGCACTATCGAAAGAA 1227
BSNT_06056___ 1231 GACATAATAGAAAAATTGA----TATTAACGGTTCCGC-----AAGAAAA 1271
|||||.||..|||||||.| |.|| |||| .||| |.|.|||
BPUM_0351___y 1228 GACATCATGCAAAAATTAAACAGTGTT-ACGG--ACGCATCTTATGCAAA 1274
BSNT_06056___ 1272 AGCGCGACGCA----TTATAACATCCGTTGAA-----AAAGCCGAT---- 1308
||| |||.| |.|||||||| ||| ||||
BPUM_0351___y 1275 --------GCAGATCTTACA--AGCCGTTGAAGACGGAAA--CGATTCTT 1312
BSNT_06056___ 1309 -ATAAAAGAATTTTTAGCT--CATATTGAATAA 1338
.||.|||.|..| ||| || |||
BPUM_0351___y 1313 CTTATAAGCAGAT---GCTGGCA---TGA---- 1335
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