Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00672 and BPUM_0356
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:26
# Commandline: needle
# -asequence dna-align/BSNT_00672___yclM.1.24716.seq
# -bsequence dna-align/BPUM_0356___yclM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00672___yclM-BPUM_0356___yclM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00672___yclM-BPUM_0356___yclM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00672___yclM
# 2: BPUM_0356___yclM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1425
# Identity: 991/1425 (69.5%)
# Similarity: 991/1425 (69.5%)
# Gaps: 108/1425 ( 7.6%)
# Score: 3303.0
#
#
#=======================================
BSNT_00672___ 1 ATGAAGGTCGTTAAATTCGGAGGCAGCTCACTTGCTTCAGGCGCCCAGCT 50
.||||||||||||||||.||.|||||.||||||||.||.|||...|||||
BPUM_0356___y 1 TTGAAGGTCGTTAAATTTGGTGGCAGTTCACTTGCATCTGGCAAGCAGCT 50
BSNT_00672___ 51 TGACAAGGTGTTTCACATCGTTACCTCAGATCCGGCACGGAAAGCTGTAG 100
..|.|||||.|||.||||.||.||..|||||||.||.||.|||||.||.|
BPUM_0356___y 51 GCAAAAGGTATTTGACATTGTAACAGCAGATCCAGCTCGAAAAGCAGTCG 100
BSNT_00672___ 101 TCGTTTCAGCTCCGGGAAAACGCTATGCCGAGGATACGAAAGTGACTGAT 150
|.|||||.||.||.||||||||..||.|...|||||||||.||.||.|||
BPUM_0356___y 101 TTGTTTCCGCACCAGGAAAACGGCATTCAACGGATACGAAGGTCACCGAT 150
BSNT_00672___ 151 CTCTTAA-TCGCATGTGCAGAACAATATTTGGCAAC----AGGCAGTGCA 195
||.|||| |.|| ||||..||.|||||||| || ||||...|||
BPUM_0356___y 151 CTATTAATTAGC-TGTGGTGAGCAATATTT----ACGTTTAGGCGAAGCA 195
BSNT_00672___ 196 CCTGAACTGGCGGAAGCAGTTGTGGAACGGTACGCTCTC-ATCGCCAATG 244
|..||..|...||||||.||..|.||||||||.|| ||| ||.||..|||
BPUM_0356___y 196 CACGATTTACAGGAAGCTGTCATTGAACGGTATGC-CTCGATTGCGGATG 244
BSNT_00672___ 245 AGCTTCAGCTGGGGCAAAG------CATTATCGAAAAAATCAGAAATGAT 288
|.||| |||..||| |.|.||.||.|..|||.|..|.|||
BPUM_0356___y 245 AACTT------GGGTTAAGTCATGACGTGATTGACACCATCCGGCAAGAT 288
BSNT_00672___ 289 CTGTTTACGCTTTTAGAAGGAGATAAAAGC----AATCCCGAGCAATACC 334
||...||..||.|||.|.|.||||| | .||||.||||.|||.|
BPUM_0356___y 289 CTAGATAGCCTCTTACAGGCAGATA----CGTCTCATCCTGAGCGATATC 334
BSNT_00672___ 335 TTGACGCAGTCAAGGCCAGCGGAGAGGATAACAATGCCAAGCTGATCGCC 384
||||.||..|.||.||.|||||.||.||.||.||.||.||||||||.||.
BPUM_0356___y 335 TTGATGCCATTAAAGCAAGCGGTGAAGACAATAACGCAAAGCTGATTGCT 384
BSNT_00672___ 385 GCTTACTTCCGTTATAAAGGCGTCAAAGCGGAATATGTAAACCCGAAGGA 434
||.||.|||||.|||.||||.|||.||||..|.|||||.|||||.|||||
BPUM_0356___y 385 GCCTATTTCCGCTATCAAGGTGTCGAAGCTCACTATGTGAACCCAAAGGA 434
BSNT_00672___ 435 TGCCGGCCTCTTTGTGACAAATGAACCCGG-CAACGCGCAAGTTCTTCCT 483
.||.||..|.|||||||...||||.||.|| ||| ||||||||.|||||.
BPUM_0356___y 435 AGCTGGTTTATTTGTGAGCGATGAGCCTGGTCAA-GCGCAAGTCCTTCCA 483
BSNT_00672___ 484 GAATCCTATCAAAACCTCTAT------------CG-TCTTCGGGAACGTG 520
||.||.|||.|..|..|.||| || |||
BPUM_0356___y 484 GAGTCATATGATCATTTGTATAAATTAAGAGAGCGCTCT----------- 522
BSNT_00672___ 521 ACGGACTCATCATTTTTCCCGGTTTTTTCGGATTCAGCAAGGAT------ 564
||..|||||||.||.||.||.|||||.|||||.|| |
BPUM_0356___y 523 --GGCATCATCATATTCCCTGGCTTTTTTGGATTTAG------TTTATCG 564
BSNT_00672___ 565 GGCGATGTGATCACATTCTCACGGAGCGGTTCTGATATTACCGGTTCGAT 614
||.||..|..|.||.||.||.||.|||||.||.||||||||||||||.||
BPUM_0356___y 565 GGAGACATCGTTACCTTTTCTCGCAGCGGCTCCGATATTACCGGTTCCAT 614
BSNT_00672___ 615 TCTTGCCAACGGACTACAAGCCGATTTGTACGAAAACTTTACAGACGTGG 664
|.|.||.|||||..|..|.||.|||.|||||||||||||||||||.||||
BPUM_0356___y 615 TTTGGCAAACGGTTTGAAGGCAGATGTGTACGAAAACTTTACAGATGTGG 664
BSNT_00672___ 665 ACGCTGTGTATTCTGTCAATCCGTCCTTCGTTGAGAATCCAAAGGAAATC 714
|.|||||.|||.||||||||||..|..|||||.|..|.||||||||.||.
BPUM_0356___y 665 ATGCTGTTTATGCTGTCAATCCAACGATCGTTCATGAGCCAAAGGAGATT 714
BSNT_00672___ 715 AGCGAGCTGACATATAGAGAGATGCGGGAGCTGTCCTACGCGGGTTTTTC 764
|..|||||.|||||.||.||.|||||.|||||.|||||.||.||||||||
BPUM_0356___y 715 ACAGAGCTAACATACAGGGAAATGCGCGAGCTATCCTATGCTGGTTTTTC 764
BSNT_00672___ 765 AGTGTTTCATGATGAAGCGCTCATTCCGGCATTCAGAGCGGGGATTCCTG 814
.||.||.|||||.|||||.||||||||.||.|||.|.||.||.|||||||
BPUM_0356___y 765 CGTTTTCCATGACGAAGCACTCATTCCAGCCTTCCGTGCAGGCATTCCTG 814
BSNT_00672___ 815 TTCAGATCAAAAATACGAACAACCCCTCAGCCGAAGGCACCCGCGTCGTC 864
|.|||||.|||||.||.||.|||||.||.||..|||||||.....||||.
BPUM_0356___y 815 TGCAGATTAAAAACACCAATAACCCTTCGGCAAAAGGCACAAAAATCGTG 864
BSNT_00672___ 865 AGCAAGCGGGATAACACAAACGGGCCTGTCGTCGGCATTGC--CAGCGAC 912
|.|.||||||||.|.||.||.||.||.||.|||||.||.|| || |||
BPUM_0356___y 865 AACCAGCGGGATCATACCAATGGACCCGTTGTCGGAATCGCTTCA--GAC 912
BSNT_00672___ 913 ACCGGTTTTTGCAGCATTTATATCAGCAAGTATCTCATGAACAGAGAAAT 962
|..||.|||||||||||||||||.|||||.|||.|.||||||.|||||.|
BPUM_0356___y 913 AGTGGATTTTGCAGCATTTATATTAGCAAATATTTAATGAACCGAGAAGT 962
BSNT_00672___ 963 CGGTTTTGGCCGCAGAGCCCTTCACATCCTGGAGGAGCATGGTTTGACGT 1012
|||||||||.||.|..|..||.||.|...|.|||||..||||..|.||||
BPUM_0356___y 963 CGGTTTTGGGCGTAAGGTGCTGCAAACGTTAGAGGAATATGGACTTACGT 1012
BSNT_00672___ 1013 ATGAGCATGTTCCATCGGGAATCGATGACATGACAATCATTTTATGGCAG 1062
||||||||||.||.||.||.||.|||||.||||..||.||||||.|||||
BPUM_0356___y 1013 ATGAGCATGTCCCTTCTGGCATTGATGATATGAACATTATTTTAAGGCAG 1062
BSNT_00672___ 1063 GGGCAAATGGATGCCGCCAC----TGAAC--GCAGCGTCATCAAACGGAT 1106
|..||..|||| |..||.|| ||||| | ||| |..|| |||
BPUM_0356___y 1063 GATCAGTTGGA-GGAGCAACATATTGAACAAG-AGC-TACTC-----GAT 1104
BSNT_00672___ 1107 CG----AAG--AGGATTTGCATGCCGATGAAGTCATCGTCGAGCATCATC 1150
|| ||| ||...||| ||||.|||||.|||.|..|.||.|...|||
BPUM_0356___y 1105 CGCTTAAAGCTAGTGCTTG-ATGCAGATGAGGTCGTGTTAGAACCGAATC 1153
BSNT_00672___ 1151 TCGCCCTGATTATGGTTGTAGGGGAAGCGATGCGCCACAATGTCGGTACA 1200
||.||||.||||||.|||||||.|||||||||||.||||||||.||.||.
BPUM_0356___y 1154 TCTCCCTCATTATGATTGTAGGAGAAGCGATGCGTCACAATGTTGGCACC 1203
BSNT_00672___ 1201 ACGGCAAGAGCCGCCAAAGCATTATCAGAGGCACAGGTGAATATCGAAAT 1250
||.||||||||.||.||.||..|.|||.|.||..||||.|||||.|||||
BPUM_0356___y 1204 ACAGCAAGAGCGGCAAAGGCGCTGTCAAAAGCGAAGGTCAATATTGAAAT 1253
BSNT_00672___ 1251 GATCAATCAGGGATCTTCTGAAGTGAGCATGATGTTTGGCGTAAAAGAAG 1300
|||||||||.||.||.||.||.||.|||||||||||||||||.||||..|
BPUM_0356___y 1254 GATCAATCAAGGCTCCTCAGAGGTCAGCATGATGTTTGGCGTCAAAGCGG 1303
BSNT_00672___ 1301 CCGAAGAAAGAAAAGCCGTCCAAGCGTTATACCGGGAATTTTTCGC--GG 1348
|..||||||.|.||||.||.||||||||.||...||||||||||.| .|
BPUM_0356___y 1304 CTCAAGAAAAAGAAGCTGTGCAAGCGTTGTATGAGGAATTTTTCTCTATG 1353
BSNT_00672___ 1349 GCGTGCTG-------ATCTCTTAA- 1365
.| |.||| .||||||.|
BPUM_0356___y 1354 TC-TACTGTTCCTGTCTCTCTTTAA 1377
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