Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00680 and BPUM_0358
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:27
# Commandline: needle
# -asequence dna-align/BSNT_00680___ycnC.1.24716.seq
# -bsequence dna-align/BPUM_0358___ycnC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00680___ycnC-BPUM_0358___ycnC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00680___ycnC-BPUM_0358___ycnC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00680___ycnC
# 2: BPUM_0358___ycnC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1068
# Identity: 536/1068 (50.2%)
# Similarity: 536/1068 (50.2%)
# Gaps: 357/1068 (33.4%)
# Score: 1138.0
#
#
#=======================================
BSNT_00680___ 1 --------------------ATG-CTT-----GAT-----AAAA--AAAC 17
|.| ||| ||| |||| ||..
BPUM_0358___y 1 ATGGTTTTGCCGATTCGGAAAGGACTTATGAAGATGAACGAAAAGCAAGA 50
BSNT_00680___ 18 AGATATCTTGTTAGCCGCG---CGA--AAGCTTTTTTCGGAAAAGGATTT 62
|||.||.||| ||.| ||| ||..|.|||||..||||.|..|.
BPUM_0358___y 51 AGAGATTTTG-----CGGGTTTCGAAGAAATTATTTTCTCAAAAAGGCTA 95
BSNT_00680___ 63 TACGTCGGTTTCCATGCAGGCGATCGCAGAAGAATGTAAGATGTCAAAAG 112
||.|...||.|||||||||.|.|||||.||.|..|||||.||.|||||||
BPUM_0358___y 96 TATGAGTGTCTCCATGCAGTCAATCGCCGATGCCTGTAAAATATCAAAAG 145
BSNT_00680___ 113 CTTCGATATATAAGCTGTTTCAATCTAAAGAAGATCTGCTTTTGGAGCTG 162
|.||.||.|||||.||||||.|.||.|||||||.|||.||.||.||.|||
BPUM_0358___y 146 CGTCTATTTATAAACTGTTTGATTCAAAAGAAGCTCTTCTATTAGAACTG 195
BSNT_00680___ 163 CTGTCATTTAACCAGAAGC-AAATG-GTGGCCGCGGCCTCAAGACT--TC 208
.|...||..||.||| .|| ||||| |.| |||.| ||
BPUM_0358___y 196 ATTAAATACAATCAG-TGCAAAATGAGAG------------AGATTTCTC 232
BSNT_00680___ 209 AGGAAAATACCGCACTTACACCGGAGGAGCGTTTGACGC------AAAAG 252
|| || ||.|.|..| ||.|.| ||||| |||||
BPUM_0358___y 233 AG----AT----CATTCATTC---AGAAAC----GACGCTGTCCAAAAAG 267
BSNT_00680___ 253 G------TCA-AAATGGAA-------CTGGAGGGCTTCAGGCG------- 281
| ||| ||| ||| ||.|| ||||.|.|.|
BPUM_0358___y 268 GAAAAATTCACAAA--GAAGATCAAGCTTGA--GCTTGAAGAGTTTAAAG 313
BSNT_00680___ 282 -GAATCAGCAGTTTTTCAATATGCTGACCTACGGAAACCCCAAGCT---- 326
||||||..|.|||||.|||||||||.|||..| |||||
BPUM_0358___y 314 AGAATCATAAATTTTTGAATATGCTGTCCTTTG--------AAGCTTTTT 355
BSNT_00680___ 327 ----GCAT------AATGACCGGGTCAAACAGCATATCCATCAGACCAGA 366
|||| |.| ||||...|||||.|.|.|.||||
BPUM_0358___y 356 CACAGCATTCGCCCATT------GTCATTAAGCATTTACGTGAGAC---- 395
BSNT_00680___ 367 TCG-ACGATTATC-TGC--TGGCACCGCG--ATTCGCTGATCCAGGCGTA 410
.|| ||.|||||| ||| .|||||.|.| |||...|.|..|| |.||
BPUM_0358___y 396 ACGCACCATTATCATGCAGCGGCACAGAGACATTATTTTAAGCA--CATA 443
BSNT_00680___ 411 TGGAGAAACCATTCTCCCGTTTGTGTGGGAT-TTGGTTATCATT---CTT 456
|||.|||.|..||...||.|..||.|||||| ||| ||||| ||.
BPUM_0358___y 444 TGGTGAATCTGTTGCGCCTTACGTCTGGGATCTTG----TCATTGTCCTC 489
BSNT_00680___ 457 CACGGCATGATGCGTGAGT---TTTTAATGCTG----------------- 486
.||||..|.|||.|.||.| |.|||||||||
BPUM_0358___y 490 AACGGATTAATGAGAGAATTCATCTTAATGCTGGCGATTGAGCGCAAGAA 539
BSNT_00680___ 487 -ATCAAAATCGAGGAAAAACCGCT----TGAGCTTGACCCGATCGCAGAG 531
|||.||.| ||.|||..||||| ||| || |||| |
BPUM_0358___y 540 CATCCAATT--AGAAAATGCCGCTGAAATGA--TT------ATCG----G 575
BSNT_00680___ 532 T-TTATCATCAGCACCCTCAATCAGATTATC-AAAAACAGGGAAACCCGC 579
| |.|| |.||| |..|||| ||||| ||
BPUM_0358___y 576 TGTGAT-----GGACC--------GTGTATCGAAAAA-----------GC 601
BSNT_00680___ 580 CAGTCTCTTCTTCCGCCCGAAGCCATC----GAGCT---------TTATA 616
|...||| |.||..|||.| .||.|.| ||||| ||||.
BPUM_0358___y 602 CTTGCTC-TATTGAGCCTG-TGCTAACAGATGAGCTGATGGACTCTTATT 649
BSNT_00680___ 617 TTCATTCAGCATCCTCCTACAAGCCAAAGGATAAATCAGTCCTATTATCG 666
|.|.||| || ||.|||||.|| |||.|
BPUM_0358___y 650 TGCTTTC------------CA---CACAGGATGAA-------TATGA--- 674
BSNT_00680___ 667 GAAAGCCTGAAGGAATTACATAAAGGCATCTCTTCCCTGTCCGCCGCGGA 716
||||| |||.||.|.||.| |.||.|
BPUM_0358___y 675 -------TGAAG---------AAAAGCTTGTCAT----------CTCGTA 698
BSNT_00680___ 717 CTATGACGTAGATGA----------------ACTGACATCCGCAG----- 745
|| |.|||.||||.| ||||.||..||.||
BPUM_0358___y 699 CT-TAACGAAGATCAAACAAGAGCTTCACACACTGTCAAACGGAGAAGAA 747
BSNT_00680___ 746 -----------CCGCCATGCTGGAGGAA----GAAGCGAAG--------A 772
||.|..||| |...||| .|||.|||| |
BPUM_0358___y 748 AAGGACGATCTCCTCTCTGC-GTTTGAACTGCTAAGTGAAGAATTATCAA 796
BSNT_00680___ 773 AGGA-------AGAACCCCGCGCTTTTTTACTCAAATCACTGATTGGCTA 815
|||| |||||| ||||||.|||..|||||..|||..||
BPUM_0358___y 797 AGGACCAACCGAGAACC-------TTTTTAATCAGTTCACTACTTGATTA 839
BSNT_00680___ 816 TCT-GGAACAAACCAGTGTTTTAACACAGCCCGTTTC-CATGTTAAAAAC 863
|.| ||.| |||.|||.||||||.||||...|||.|| ||..|.||||.|
BPUM_0358___y 840 TTTAGGCA-AAAACAGCGTTTTATCACAAAACGTGTCACAGCTGAAAAGC 888
BSNT_00680___ 864 ACTGTTAATTACTTAG-- 879
| |.|| ||||.
BPUM_0358___y 889 A----TCAT--CTTATAG 900
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