Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00699 and BPUM_0370

See Amino acid alignment / Visit BSNT_00699 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:28
# Commandline: needle
#    -asequence dna-align/BSNT_00699.1.24716.seq
#    -bsequence dna-align/BPUM_0370.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00699-BPUM_0370.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00699-BPUM_0370.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00699
# 2: BPUM_0370
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 451
# Identity:     322/451 (71.4%)
# Similarity:   322/451 (71.4%)
# Gaps:          35/451 ( 7.8%)
# Score: 1074.0
# 
#
#=======================================

BSNT_00699         1 ATG---CAAGTACTCGCAAAGGAAAACAT-----TAAAC--TCAATCAAA     40
                     |||   ||||||||..||||.||.||.||     |||||  .|||.||  
BPUM_0370          1 ATGAAACAAGTACTTTCAAAAGACAATATTTTTCTAAACGAACAAGCA--     48

BSNT_00699        41 CGGTATCATCAAAAGAAGAGGCTATCAAATTGGCAGGCCAGACG-CTGAT     89
                      ||    |||.||||||||.||.||||||...||||||  ||.| ||.|.
BPUM_0370         49 -GG----ATCGAAAGAAGAAGCCATCAAAAAAGCAGGC--GAAGTCTTAG     91

BSNT_00699        90 TGAC-AACGGCTACGTGACAGAG-GATTACATTAGCAAAATGTTTGAACG    137
                     ||.| ||.|||||.||.||| || |||||..||..|||||||||||||.|
BPUM_0370         92 TGGCAAATGGCTATGTCACA-AGTGATTATGTTGACAAAATGTTTGAAAG    140

BSNT_00699       138 TGAAGAAACGTCTTCTACGTTTATGGGGAATTTCATTGCCATTCCACACG    187
                     .|||.|.|..||.|||||.||||||||.|||...|||||.||.||.||.|
BPUM_0370        141 AGAAAATATCTCATCTACATTTATGGGCAATGGGATTGCGATACCTCATG    190

BSNT_00699       188 GCACAGAAGAAGCGAAAAGCGAG--GTGCTTCACTCAGGAATTTCAATCA    235
                     |.|||||.||.|| |||||| ||  ||.|||||.||.||.|||||.||||
BPUM_0370        191 GAACAGAGGATGC-AAAAGC-AGCTGTCCTTCATTCTGGGATTTCCATCA    238

BSNT_00699       236 TACAGATTCCAGAGGGCGTTGAGTACGGAGAAGGCAACACGGCAAAAGTG    285
                     |.||.||||||||.||.|||||.|||||.|||||.||.|..||.|||||.
BPUM_0370        239 TTCAAATTCCAGATGGTGTTGAATACGGCGAAGGAAATATCGCCAAAGTC    288

BSNT_00699       286 GTATTCGGCATTGCGGGTAAAAATAATGAGCATTTAGACATTTTGTCTAA    335
                     ||.||.|||||.||.||||||||.||.||.|||.|.||.|||.|.|||.|
BPUM_0370        289 GTTTTTGGCATCGCTGGTAAAAACAACGAACATCTCGATATTCTTTCTCA    338

BSNT_00699       336 CATCGCCATTATCTGTTCAGAAGAAGAAAACATTGAACGCCTGATCTCCG    385
                     .||.||.|||.|||||||||||||.|||||..|.||||||.|.|||...|
BPUM_0370        339 AATTGCGATTGTCTGTTCAGAAGAGGAAAATGTAGAACGCATTATCCATG    388

BSNT_00699       386 CTAAAAGCG----AAGAAGATTTGATCGCCATTTTCAACGAGGTGAACTG    431
                     |.||    |    |.||.||..||||||||||.||.|||||||||||||.
BPUM_0370        389 CCAA----GGATCAGGATGAACTGATCGCCATCTTTAACGAGGTGAACTA    434

BSNT_00699       432 A    432
                     |
BPUM_0370        435 A    435


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.