Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00700 and BPUM_0371

See Amino acid alignment / Visit BSNT_00700 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:28
# Commandline: needle
#    -asequence dna-align/BSNT_00700___mtlD.1.24716.seq
#    -bsequence dna-align/BPUM_0371___mtlD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00700___mtlD-BPUM_0371___mtlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00700___mtlD-BPUM_0371___mtlD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00700___mtlD
# 2: BPUM_0371___mtlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1203
# Identity:     767/1203 (63.8%)
# Similarity:   767/1203 (63.8%)
# Gaps:         162/1203 (13.5%)
# Score: 2145.0
# 
#
#=======================================

BSNT_00700___      1 ATGATCGC-CTTACATTTCGGTGCGGGAAATATCGGGAGAGGATTTATCG     49
                     ||||..|| ||| |||||.||.||.||.|||||.||.|||||.|||||||
BPUM_0371___m      1 ATGAAGGCACTT-CATTTTGGAGCAGGGAATATTGGCAGAGGGTTTATCG     49

BSNT_00700___     50 GCGCGCTGCTTCACCAC-TCCGGCTATGATGTGGTGTTTGCGGATGTGAA     98
                     |..|..|| ||.|..|| ||.||.|.|||..|.||.|||.|.|||||.||
BPUM_0371___m     50 GATCTTTG-TTAAAAACATCAGGTTTTGAGCTTGTCTTTACCGATGTAAA     98

BSNT_00700___     99 CGAAACGATGGTCAGCCTCCTCAATGAAAAAAAAGAATACACAGTGGAAC    148
                     .|||.||.|..|||.|...||.||||.|..|..|||||||||.||.||||
BPUM_0371___m     99 TGAAGCGGTCATCAACGAGCTGAATGCACGAGGAGAATACACGGTTGAAC    148

BSNT_00700___    149 TGGC-GGAAGAGG---GACGTTCATCGGAGATCATTGGCCCGGTGAGCGC    194
                     |.|| |.|..|||   ||.|  ||  .||.||..|.|||||.||||..||
BPUM_0371___m    149 TCGCAGCACCAGGTCAGAAG--CA--AGAAATAGTCGGCCCAGTGACAGC    194

BSNT_00700___    195 TATTAA--------------CAGCGGCAGTCAGACCGAGGAGCTGTACCG    230
                     .|||||              ||||||||.|  .||.|||  |||||   |
BPUM_0371___m    195 GATTAATTCTGCACAAGATCCAGCGGCATT--AACAGAG--GCTGT---G    237

BSNT_00700___    231 GCTGATGAATGAGGCG----GCGCTCATCACAACAGCTGTCGGCCCGAAT    276
                     ||      ||.||.||    |     ||.|||||||||||.||.||...|
BPUM_0371___m    238 GC------ATCAGCCGATTTG-----ATTACAACAGCTGTTGGACCAGCT    276

BSNT_00700___    277 GTGCTGAAGCTGATTGCCCCGTCTATCGCAGAAGGTTTAAGACGAAGAAA    326
                     ||..|||||.|.|||||..|.||.||.|||||.||..|||.||  |||||
BPUM_0371___m    277 GTTTTGAAGATCATTGCTTCATCCATTGCAGAGGGACTAAAAC--AGAAA    324

BSNT_00700___    327 TA--CTGCAAACACA--CTGAATATCATTGCCTGCGAAAATATGATTGGC    372
                     .|  |||  |.||.|  .|.||.|||.|.||.||.||||||||||||   
BPUM_0371___m    325 AACCCTG--ACCATATTATCAACATCGTGGCATGTGAAAATATGATT---    369

BSNT_00700___    373 GGAAGCAGCT-TC--TTAAAGAAAGAGATATACAGC----------CATT    409
                     |||.|||||| ||  |||||     |||     |||          |||.
BPUM_0371___m    370 GGAGGCAGCTCTCATTTAAA-----AGA-----AGCTGTTTTCTCTCATC    409

BSNT_00700___    410 TAACGGAAGCAGAGCAGAAA---TCCGTCAGTGAAACGGTAGGTTTTCCG    456
                     |.||.||||..||.|| |||   .|.||||  .||||.||.||||||||.
BPUM_0371___m    410 TCACAGAAGAGGAACA-AAAGGCGCTGTCA--CAAACAGTTGGTTTTCCA    456

BSNT_00700___    457 AATTCTGCCGTTGACCGGATCGTCCCGATTCAGCATCATGAAGACCCGCT    506
                     ||..||||.||.|||||.||.||.|||||||||||.|||||.||....||
BPUM_0371___m    457 AACGCTGCTGTGGACCGCATTGTACCGATTCAGCACCATGAGGATATTCT    506

BSNT_00700___    507 GAAAGTATCGGTTGAACCATTTTTCGAATGGGTCATTGATGAATCAGGCT    556
                     .||||||||.||.||.||.||||||||.||||||||||||||..|.||||
BPUM_0371___m    507 AAAAGTATCAGTCGAGCCTTTTTTCGAGTGGGTCATTGATGAGACTGGCT    556

BSNT_00700___    557 TTAAAGGGAAAAC--ACCAGTCATAA---ACGGCGCACTGTTTGTTGATG    601
                     |||..||  |.||  .||  ||| ||   ||||.|||...|||||..|.|
BPUM_0371___m    557 TTATCGG--AGACGTTCC--TCA-AATTGACGGAGCAACCTTTGTACAAG    601

BSNT_00700___    602 ATTTAACGCCGTACATCGAACGGAAGCTGTTTACGGTCAATACCGGACAC    651
                     ||||.||||||||.||.||.||.|||||.|||||.||||||||.|||||.
BPUM_0371___m    602 ATTTGACGCCGTATATTGAGCGCAAGCTCTTTACTGTCAATACAGGACAT    651

BSNT_00700___    652 GCGGTGACAGCGTATGTCGGCTATCAGCGCGG-ACTCAAGACGGTCAAAG    700
                     |||.|..||||.||||||||.|||||||..|| ..|||| |||.|.||||
BPUM_0371___m    652 GCGCTAGCAGCTTATGTCGGGTATCAGCAAGGTGTTCAA-ACGATTAAAG    700

BSNT_00700___    701 AAGCAATCGAT-CATCCGGAAATCCGCCGTGTCGTTCATTCGGCGCTGCT    749
                     ||||..||||| || ||.||.||.||.|..||.|||.|....||.||.|.
BPUM_0371___m    701 AAGCCGTCGATACA-CCAGAGATTCGTCAGGTAGTTGAAGGTGCACTTCA    749

BSNT_00700___    750 TGAAACTGGTGACTATCTCGTCAAATCG-----TATGGCTTTAAGCAAAC    794
                     .|||||.||....|||.|     |||||     ||.||||||||..||..
BPUM_0371___m    750 CGAAACGGGCAGTTATTT-----AATCGACACATACGGCTTTAAAAAAGA    794

BSNT_00700___    795 TGAACACGAACAATATATCAAAAAAATCATCGGTCGCTTTGAAAATCCTT    844
                     .|||||.||....|||||..|||||||||||...||.||.||||||..||
BPUM_0371___m    795 AGAACATGATGCGTATATACAAAAAATCATCAAACGATTCGAAAATGTTT    844

BSNT_00700___    845 TCATTTCGGACGATGTGACCCGCGTAGCGAGGTCACCTCTCAGAAAACTG    894
                     |.|||||.||.||.||.||.||.||.||..|.||.|||||.|||||.||.
BPUM_0371___m    845 TTATTTCCGATGAAGTCACTCGTGTCGCACGCTCTCCTCTTAGAAAGCTA    894

BSNT_00700___    895 GGAGAAAATGATAGGCTTGTAGGCCCGGCAAAGAAAATAAAAGAACCGAA    944
                     ||||.|.||||..|..|..|.||.||.||.||.||.|| .|||.|.|.|.
BPUM_0371___m    895 GGAGCAGATGACCGTTTAATCGGTCCTGCGAAAAAGAT-GAAGCAGCCAG    943

BSNT_00700___    945 TGCACTGGCGG------AAGGAATTGCCGCAGCACTGCGCTT-CGATTTC    987
                     ||.|||           ||||.|||||.|||||.|| .|||| .||.||.
BPUM_0371___m    944 TGTACT-----TAATCAAAGGCATTGCTGCAGCTCT-TGCTTATGACTTT    987

BSNT_00700___    988 ACCGGTGACCCTGAAGCGGTT--------GAACTGCAAGCGCTGATCGAA   1029
                     .|||..|||...|||||||||        |||.|        |.|...||
BPUM_0371___m    988 GCCGAAGACGAAGAAGCGGTTCGTTTGCAGAAAT--------TAAGAAAA   1029

BSNT_00700___   1030 GAAAAAGG-ATACAGCGGCGTACTTCAAGAGGAGTGCGGCATTCAGTCCC   1078
                     |||||||| ||..| .||.||.||..||||.|..||.||| .|||..|| 
BPUM_0371___m   1030 GAAAAAGGCATTGA-AGGTGTGCTAGAAGAAGTATGTGGC-CTCACGCC-   1076

BSNT_00700___   1079 ATGAACCGTTG--------CACGCCATCATTTTAAAGAAACTTAA-TCAA   1119
                        |||.|.||        ||.|||||  |.|.||||||||  || ||.|
BPUM_0371___m   1077 ---AACAGATGATCTTTATCAAGCCAT--TCTGAAAGAAAC--AACTCGA   1119

BSNT_00700___   1120 TAA   1122
                     |||
BPUM_0371___m   1120 TAA   1122


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