Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00709 and BPUM_0378

See Amino acid alignment / Visit BSNT_00709 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:29
# Commandline: needle
#    -asequence dna-align/BSNT_00709___ycsE.1.24716.seq
#    -bsequence dna-align/BPUM_0378___ycsE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00709___ycsE-BPUM_0378___ycsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00709___ycsE-BPUM_0378___ycsE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00709___ycsE
# 2: BPUM_0378___ycsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 769
# Identity:     552/769 (71.8%)
# Similarity:   552/769 (71.8%)
# Gaps:          32/769 ( 4.2%)
# Score: 1871.0
# 
#
#=======================================

BSNT_00709___      1 ATGTCTGTTCAA--AGAGAAGATGTAGATATCAAGCTGATCGCAATTGAT     48
                     .||||..|.|||  .||.||||  .|||.|||....||||.||.||||||
BPUM_0378___y      1 TTGTCCATACAAGCTGATAAGA--AAGACATCCGATTGATTGCCATTGAT     48

BSNT_00709___     49 ATGGATGGTACACTGCTGAACGACGAGCAGCTGATCTCGGATGAAAACCG     98
                     ||||||||.||.|||.|.|||...||.||..|.||..|.||.||||||..
BPUM_0378___y     49 ATGGATGGCACGCTGTTAAACAGTGAACACGTCATTCCAGAGGAAAACAA     98

BSNT_00709___     99 CAAAGCCATTCGTGAAGCGGAGGATAAAGGTGTGTATGTGGTGATCAGCA    148
                     ..||||||||...||.||.||.|..|||||.||..||||.|||||.||||
BPUM_0378___y     99 ACAAGCCATTAAAGATGCTGAAGCAAAAGGAGTCCATGTAGTGATTAGCA    148

BSNT_00709___    149 CGGGCCGGACGCTGATGACGTGCCGGGAGCTGGCGGAATCGCTAAAGCTG    198
                     |.||.||.||.||||||||.|||||.|||||.|..||..||||.||||||
BPUM_0378___y    149 CAGGGCGCACACTGATGACATGCCGAGAGCTCGTTGAGCCGCTTAAGCTG    198

BSNT_00709___    199 TCATCCTTTCTAATCACGGCAAACGGCAGTGAAATTTGGGATTCGAATTT    248
                     ||.||.|..||..|.||.||.|||||.||||||||.||||||||.||.||
BPUM_0378___y    199 TCTTCTTACCTTGTGACAGCCAACGGAAGTGAAATCTGGGATTCAAACTT    248

BSNT_00709___    249 TAATTTGGTGGAACGGAAGCTGCTTCATACGGACCATATTCAAATGATGT    298
                     ..|..||.|.|||||..|.|||||.|||.|.||.|||.|.||||||||||
BPUM_0378___y    249 CCAACTGATCGAACGAGATCTGCTACATCCTGATCATGTCCAAATGATGT    298

BSNT_00709___    299 GGGATTTGCGGAATAAGCACAACACTAATTTCTGGGCTTCTACGGTGAAT    348
                     |||||.|....||||.|.||.|.||..|||.|||||||||.||.|||.||
BPUM_0378___y    299 GGGATCTAAAAAATAGGTACGAAACCGATTACTGGGCTTCCACTGTGGAT    348

BSNT_00709___    349 AAAGTATGGAGAGGCGAGTTTCCGGAA--AA--CATTACGGATCATGAAT    394
                     ||.||.||||||||.||.||.||.|||  ||  |||    ||.|||||||
BPUM_0378___y    349 AAGGTGTGGAGAGGTGAATTCCCAGAACGAATTCAT----GACCATGAAT    394

BSNT_00709___    395 GGCTCAAATTCGGCTTTGACATTGAGGATGACGATATCCGAAACGAAGTG    444
                     ||.|.|||||.||||||||.|||.|.|||||.||..|.||..|.|||||.
BPUM_0378___y    395 GGTTGAAATTTGGCTTTGATATTCATGATGATGACGTTCGTGAGGAAGTA    444

BSNT_00709___    445 CTTCAGGAGC--TGAGAAAAAACAAA-GAG---CTCGAAATCACAAATTC    488
                     | |||..| |  ||    |||||||| |||   ||.||||||||||||||
BPUM_0378___y    445 C-TCAATA-CATTG----AAAACAAATGAGCATCTAGAAATCACAAATTC    488

BSNT_00709___    489 AAGTCCGACAAACATTGAAGTCAACGC-GCTTGGCATCAACAAAGCTGCA    537
                     |||||||||.||.|||||||||||.|| || .|||||.||||||||.|||
BPUM_0378___y    489 AAGTCCGACCAATATTGAAGTCAATGCAGC-GGGCATTAACAAAGCGGCA    537

BSNT_00709___    538 GCCCTTGCCAAGGTTACGGAAAAACTCGGCATTACAATGGAGAATGTGAT    587
                     ||.|||||.|||||..|||||....|.|||..|||.|||||.|||||.||
BPUM_0378___y    538 GCTCTTGCAAAGGTAGCGGAACGCATTGGCTGTACGATGGACAATGTCAT    587

BSNT_00709___    588 GGCGATGGGCGACAGCCTTAATGACATTGCGATGATCAAAGAAGCGGGTC    637
                     |.|..|.|||||||||||.|||||.||.||.||||||.|||||||.||..
BPUM_0378___y    588 GTCACTTGGCGACAGCCTAAATGATATGGCCATGATCCAAGAAGCCGGAT    637

BSNT_00709___    638 TTGGCGTCGCAATGGGCAATGCGCAAGACATCGTAAAAGAAACGGCTGAT    687
                     |.|||.|.||.|||||.|||||||||||..|.|||||||||.|.||||||
BPUM_0378___y    638 TAGGCATTGCGATGGGAAATGCGCAAGAAGTGGTAAAAGAAGCCGCTGAT    687

BSNT_00709___    688 TATATCACGGATACAAATATTGAGGATGGTGTCGCTAAAGCGATTCGCCA    737
                     |..||.||.|.|.|.||.|..|||.|||||||.||.||.|||||.|..||
BPUM_0378___y    688 TGGATTACAGCTCCTAACACAGAGCATGGTGTAGCAAAGGCGATCCAGCA    737

BSNT_00709___    738 TTGGGTACT------ATAA    750
                     ||||||.||      ||||
BPUM_0378___y    738 TTGGGTGCTGTCTAAATAA    756


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