Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00710 and BPUM_0379

See Amino acid alignment / Visit BSNT_00710 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:29
# Commandline: needle
#    -asequence dna-align/BSNT_00710___ycsF.1.24716.seq
#    -bsequence dna-align/BPUM_0379___ycsF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00710___ycsF-BPUM_0379___ycsF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00710___ycsF-BPUM_0379___ycsF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00710___ycsF
# 2: BPUM_0379___ycsF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     558/814 (68.6%)
# Similarity:   558/814 (68.6%)
# Gaps:          95/814 (11.7%)
# Score: 1785.0
# 
#
#=======================================

BSNT_00710___      1 GTGTTTCAGATTGATTTAAACTGTGATTTAGGAGAAAGCTTCGGATC---     47
                     .|||.|||..|.|||.|.|||||||||||.|||||||||||.|| ||   
BPUM_0379___y      1 ATGTATCAAGTAGATATCAACTGTGATTTGGGAGAAAGCTTTGG-TCAAT     49

BSNT_00710___     48 CTACAAGATAGGTCT----TGACCAAGATATTTTAGAGTATGTGACATCA     93
                     .||||  ||.||| |    |||.|||   ||||||||.|||||.||.|||
BPUM_0379___y     50 ATACA--ATCGGT-TCAGATGAACAA---ATTTTAGAATATGTCACCTCA     93

BSNT_00710___     94 GCGAATATCGCATGCGGATTTCATGCAGGAGATCCTAGTGTTATGCGAAA    143
                     ||.||.|||||.|||||.|||||||||||||||||.|..||.|||.||||
BPUM_0379___y     94 GCCAACATCGCTTGCGGTTTTCATGCAGGAGATCCAACGGTGATGAGAAA    143

BSNT_00710___    144 AACCGTCGCGCTTGCAGCGGAAAAAGGCGTAAAAATCGGTGCGCATCCGG    193
                     |||||||....|.|||...||||||||.|||.||||.|||||||||||||
BPUM_0379___y    144 AACCGTCAGAATGGCACTAGAAAAAGGGGTACAAATTGGTGCGCATCCGG    193

BSNT_00710___    194 GCTTGCCGGATTTACTCGGTTTTGGGCGCCG--CAATATGGCGATTTCTC    241
                     |..|||..||||||.||||.|||||..|.||  |||||  ||||||||..
BPUM_0379___y    194 GTCTGCAAGATTTAGTCGGCTTTGGCAGACGTCCAATA--GCGATTTCAG    241

BSNT_00710___    242 CTGAGGAAGCGTATGATCTTGTCGTTTATCAAATTGGCGCGCTCTCTGGC    291
                     |.||||||||.||||||||.|||||.||||||||||||||.||.||.|.|
BPUM_0379___y    242 CAGAGGAAGCCTATGATCTCGTCGTCTATCAAATTGGCGCTCTATCAGCC    291

BSNT_00710___    292 TTTCTAAAAGCAGAGGGACTTCAC-ATGCAGCACGTCAAGCCGCATGGCG    340
                     |||||.||.|||||.|| |..||| ||||||||.||||||||.||.||.|
BPUM_0379___y    292 TTTCTCAAGGCAGAAGG-CAGCACGATGCAGCATGTCAAGCCACACGGTG    340

BSNT_00710___    341 CTTTATACAATATGGCGGCAGTCGATCAAAA-ACTG-----TCGGATGCT    384
                     |..|.|||||.||||||||      |.|||| ||||     ||.||..||
BPUM_0379___y    341 CACTGTACAACATGGCGGC------TAAAAATACTGAATTATCTGAATCT    384

BSNT_00710___    385 ATCGCGAAAGCTGTCTATAAGATTGATCCAGGCCTGATTCTTTTCGGTCT    434
                     ||.|||||.|||||.|||.|..|.||||||.|.||..|..|.|.|||.||
BPUM_0379___y    385 ATTGCGAAGGCTGTGTATCATGTCGATCCAAGTCTTGTATTATACGGGCT    434

BSNT_00710___    435 TGCTGAGAGTGAGCTTGTAAAAGCGGGAGAACGGATCGGACTTCAGACCG    484
                     |.|.|..|||||.||||....|||.||.||..||||.||.|||||....|
BPUM_0379___y    435 TTCAGGCAGTGAACTTGCGTTAGCAGGTGAGAGGATGGGTCTTCAAGTGG    484

BSNT_00710___    485 CAAATGAAGTGTTCGCCGACAGAACATACCAATCGGACGGCACGCTGACA    534
                     ||.||||||||||..|.||..||||.||.|||.|.|||||.|||||||||
BPUM_0379___y    485 CACATGAAGTGTTTTCTGATCGAACCTATCAAACAGACGGAACGCTGACA    534

BSNT_00710___    535 CCGCGCTCCCAGCCGGACGCACTCATTGAAAGTGATGA--TGCCGCCG-T    581
                     .|.|||..|.|.||..||||||||||||||...||.||  ||  ||.| |
BPUM_0379___y    535 TCACGCCGCGAACCAAACGCACTCATTGAAGACGACGAACTG--GCAGTT    582

BSNT_00710___    582 CACCCAGG----TCATCAAAATGGTGAAAGAAGGGGCGGTCAAATCTCA-    626
                     || .||||    ||.|    |||||||..||||||..|||      ||| 
BPUM_0379___y    583 CA-GCAGGTTGTTCGT----ATGGTGAGGGAAGGGAAGGT------TCAT    621

BSNT_00710___    627 -----GCAAGGACATGATGTGTCATTAAAAGCAGATACAGTCTGCATTCA    671
                          .|||||..|.|||.|.||..|.|||||||||||.|||||.||.||
BPUM_0379___y    622 ACCGTTCAAGGGGAAGATATCTCGCTTAAAGCAGATACGGTCTGTATACA    671

BSNT_00710___    672 TGGAGATGGAGCCCATGCGCTGACATTTGCGCAAAA--AATCAGAAAACA    719
                     .|||||.||....||||||||...|||||| |||||  |.|      |||
BPUM_0379___y    672 CGGAGACGGCATTCATGCGCTCCAATTTGC-CAAAACCATT------ACA    714

BSNT_00710___    720 GCTCAAAGCGGCTGGAATTGAAGTGAC-AGCTATT----TCAGAACAGAG    764
                     .||.||     |||.||  ||||   | ||| |||    |||      ||
BPUM_0379___y    715 TCTAAA-----CTGAAA--GAAG---CAAGC-ATTCGTCTCA------AG    747

BSNT_00710___    765 G----TCAACATAA    774
                     |    |||  ||||
BPUM_0379___y    748 GCCTTTCA--ATAA    759


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