Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00731 and BPUM_0389
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:30
# Commandline: needle
# -asequence dna-align/BSNT_00731___ydaC.1.24716.seq
# -bsequence dna-align/BPUM_0389___ydaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00731___ydaC-BPUM_0389___ydaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00731___ydaC-BPUM_0389___ydaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00731___ydaC
# 2: BPUM_0389___ydaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 391/707 (55.3%)
# Similarity: 391/707 (55.3%)
# Gaps: 160/707 (22.6%)
# Score: 965.5
#
#
#=======================================
BSNT_00731___ 1 ------------------ATGAT------------------TAACATGC- 13
||||| |.||||||
BPUM_0389___y 1 ATGGATAAAATCGGTTACATGATCAATAAAAAGGAGCGTTCTCACATGCT 50
BSNT_00731___ 14 --------TTTCTAGAAGATTCAGCAGGCCAAAGGGC-GTCATCGGCATG 54
||||.|.||..||.|||||.|||||.||| |.| ||||.|..
BPUM_0389___y 51 GTCAACCATTTCGAAAACCTTTAGCAGACCAAAAGGCTGGC-TCGGAAGC 99
BSNT_00731___ 55 ATTGCCGGGTACATCATGGCTGCTGAAAATCAAACACTGAATCAGTGGAC 104
||.||.||.|..||.|||||...|||||||.|..||||||||||.|||.|
BPUM_0389___y 100 ATCGCAGGTTTTATTATGGCAAATGAAAATAAGGCACTGAATCAATGGGC 149
BSNT_00731___ 105 AATCAATCAGCTGGGT-------ATCACGCGCGGGGACAGCATTTTAGAA 147
.|||.|.||..|.|.| || ||.||.|.||||||.|||
BPUM_0389___y 150 GATCCAGCATTTAGATTTGTCAGAT-------GGTGAAAACATTTTGGAA 192
BSNT_00731___ 148 GTCGGGTTTGGCCCGGGATACTGCATGCAGCAGATGCTGAAACGCGAGAA 197
.||||.|.|||.||.||.|||.||||..||||.|||||.||.|...|..|
BPUM_0389___y 193 ATCGGCTATGGGCCTGGCTACAGCATCAAGCATATGCTCAAGCATTATGA 242
BSNT_00731___ 198 GGATGTTCATCTTCATGGGATTGATGTGT----CAGAGGCCATGCTGAAG 243
.|||.||||..||.||||..|.||||..| || ||||||.|.||
BPUM_0389___y 243 CGATCTTCACATTGATGGACTAGATGCTTCCTCCA----CCATGCAGGAG 288
BSNT_00731___ 244 CTGGC---CGCCCGCAGAGT---GAAAC---CAAAGGGC------GTACG 278
|..|| ..||||| || .|||| ||||.|.| ||.||
BPUM_0389___y 289 CAAGCACAGTCCCGC---GTCAACAAACGCTCAAAAGACAAACAAGTTCG 335
BSNT_00731___ 279 CCTGATA-CAAGGAAGCATCGAGACATTTCCTCTCCCCGCCTCGTTT--- 324
.|| ||| ..|||||..||.||||.| .|.|||||
BPUM_0389___y 336 TCT-ATATGTAGGAAAAATTGAGAAA-------------ACACGTTTGCC 371
BSNT_00731___ 325 ----------TATGATAAAGTGATTTCCGTTAACAACTACACCATTTGGA 364
|||||.|||||..|.||.||.|||||||..||.||||||.
BPUM_0389___y 372 GGGAGAACAGTATGACAAAGTACTGTCAGTGAACAACTTTACGATTTGGG 421
BSNT_00731___ 365 ATGA-CCAAACAAAAGGCATG---AAACAGATTTATCGGGCATTAAAGCC 410
|||| ||||| .|..|||.|| ||.| ||||||...|.||.||.||
BPUM_0389___y 422 ATGATCCAAA-GACTGGCCTGCTCAACC---TTTATCACACGTTGAAACC 467
BSNT_00731___ 411 AGGCGGCAAAGCAGCCATTACGATGCAGCCGCGGGAA------GCGGATG 454
.|||||.|||...|.||||..|||||||||..|.||| ||.||||
BPUM_0389___y 468 CGGCGGAAAACTCGTCATTGTGATGCAGCCAAGAGAAAAAGGTGCTGATG 517
BSNT_00731___ 455 CCAGTCCTGAAAAAA--------CCAAATCATTTGGAAGACAGATGATTG 496
||||| |.||.|||| ..|||.|||.|.|| |||||
BPUM_0389___y 518 CCAGT-CGGACAAAAGAGATGGGTGAAAACATATTGA------ATGAT-- 558
BSNT_00731___ 497 CTGAC--TTTAAAGCAGCCGGCTTCGAAGACATTGATATACAATTTAAGA 544
|| || ||| ||.||.||.||..|..||..|.|..|.|.|.||.
BPUM_0389___y 559 CT-ACAGTTT------GCGGGGTTTGACCATTTTTCTGTTGAGTATGAGG 601
BSNT_00731___ 545 ACATTAAGCCTGAGCTTTCCGTCTGTGCAAGTGCAAAGAAGCC----CGC 590
|.|||...||...||||.|.|||||||..|..||.||.||||| .||
BPUM_0389___y 602 AGATTCGTCCAACGCTTGCTGTCTGTGTCACAGCCAAAAAGCCGAGAAGC 651
BSNT_00731___ 591 CACATAA 597
.| ||||
BPUM_0389___y 652 GA-ATAA 657
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