Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00744 and BPUM_0407

See Amino acid alignment / Visit BSNT_00744 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:31
# Commandline: needle
#    -asequence dna-align/BSNT_00744___ydaP.1.24716.seq
#    -bsequence dna-align/BPUM_0407___ydaP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00744___ydaP-BPUM_0407___ydaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00744___ydaP-BPUM_0407___ydaP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00744___ydaP
# 2: BPUM_0407___ydaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1785
# Identity:    1202/1785 (67.3%)
# Similarity:  1202/1785 (67.3%)
# Gaps:         123/1785 ( 6.9%)
# Score: 3757.0
# 
#
#=======================================

BSNT_00744___      1 ATGGCACACAAAACTGCAGGACAAGCAATGACAGAGCTGCTTGAGCAATG     50
                     |||.|.||.|.|||.||||||.|||.|.|.||||.|||.||.||..|.||
BPUM_0407___y      1 ATGCCGCAAAGAACCGCAGGAAAAGAAGTAACAGCGCTACTGGAAGAGTG     50

BSNT_00744___     51 GGGAGTTGATCATGTATACGGCATCCCCGGAGACAGTATAAATGAGTTTA    100
                     |||.||..|.|||.|.||.||.||.|||||.|||||.|||||.||.||.|
BPUM_0407___y     51 GGGCGTGAAACATATTTATGGAATGCCCGGTGACAGCATAAACGAATTGA    100

BSNT_00744___    101 TCGAAGAATTAAGACACGAAAGAAATCAACTGAAGTTCATTCAAACCCGC    150
                     |.||||||.|.||.||.|||..||..|||.|..|.||.||.|||||..|.
BPUM_0407___y    101 TTGAAGAACTTAGGCATGAATCAAGCCAAATACAATTTATCCAAACGAGA    150

BSNT_00744___    151 CACGAAGAGGTAGCGGCACTGGCAGCCGCGGCTGAAGCAAAACTCACCGG    200
                     ||.|||||.||.||.|||||..||||.||.|||||.||.|||||.||.||
BPUM_0407___y    151 CATGAAGAAGTGGCAGCACTATCAGCGGCAGCTGATGCCAAACTAACAGG    200

BSNT_00744___    201 CAAGATCGGAGTCTGTCTGTCAATCGCAGGGCCGGGAGCGGTGCACTTAT    250
                     .||..||||.||||||.|.||.|||||.|||||.||.||.||.|||||||
BPUM_0407___y    201 TAAACTCGGTGTCTGTTTATCTATCGCTGGGCCAGGTGCTGTCCACTTAT    250

BSNT_00744___    251 TAAATGGTTTATATGATGCTAAAGCCGACGGCGCCCCTGTGCTGGCGATT    300
                     |||||||..|.||||||||.|||||.||.||.||.||.||..|.||.|||
BPUM_0407___y    251 TAAATGGACTGTATGATGCCAAAGCAGATGGTGCACCAGTTTTAGCAATT    300

BSNT_00744___    301 GCAGGACAGGTTTCTTCTGGCGAAGTCGGACGGGACTATTTCCAGGAGAT    350
                     |||||.||||||.||||.|.||||||.||..|.|||...|||||.||.||
BPUM_0407___y    301 GCAGGGCAGGTTGCTTCGGCCGAAGTAGGCAGAGACGCATTCCAAGAAAT    350

BSNT_00744___    351 TAAGCTGGAGCAAATGTTTGAGGACGTGGCCGTGTTCAA-CAGAGAGGTA    399
                     .||..||||||..||||||||.||.||.||.||.||.|| ||| .|||||
BPUM_0407___y    351 CAAATTGGAGCGGATGTTTGACGATGTCGCTGTCTTTAATCAG-CAGGTA    399

BSNT_00744___    400 CATAGCGCGGAATCACTTCCGGATCTCTTAAATCAGGCGATCAGGACCGC    449
                     ||.|..||.||..|.||.||.||..|.||.|||||.||.||||...|.||
BPUM_0407___y    400 CAGACGGCAGAGGCGCTGCCTGACTTATTGAATCAAGCCATCAAAGCAGC    449

BSNT_00744___    450 CTACAGCAAAAAAGGCGTTGCGGTATTGAGCGTGTCAGATGATTTGTTTG    499
                     .||.|.|.|.|||||.||.||.||..|.|.|||.||||||||.||.|||.
BPUM_0407___y    450 TTATACCCATAAAGGTGTAGCAGTTCTTACCGTATCAGATGACTTATTTT    499

BSNT_00744___    500 CGGAGAAAATCAAACGGGAGCCCGTGTATACTTCACCGGTGTATAT-TGA    548
                     |..|.|||||.||.||..|.|||||.|||||.||.||  |.|.||| ||.
BPUM_0407___y    500 CTCAAAAAATAAAGCGCAAACCCGTCTATACATCTCC--TCTTTATGTGG    547

BSNT_00744___    549 AGGGAACCTTGA------ACCGAAAAAAGAACAGCT--------CG--TC    582
                     |||||     ||      ||||||.|||||.||.||        ||  ||
BPUM_0407___y    548 AGGGA-----GAAGTACGACCGAAGAAAGATCAACTGCTAAAGGCGGCTC    592

BSNT_00744___    583 ACCTGCGCCCAATATATTAATAACGCTAAGAAACCGATTATCCTGGCAGG    632
                     |.|||          |||||.||.||.|||||.||..|.|||.|.|||||
BPUM_0407___y    593 AGCTG----------ATTAACAATGCGAAGAAGCCAGTCATCTTAGCAGG    632

BSNT_00744___    633 GCAGGGA-------ATGAAAAAGGCGAAACGGGAGC-TCTTAGAATTTGC    674
                     ..|.|||       |||.|||||    ||   |||| |||| ..||||||
BPUM_0407___y    633 TAAAGGATTAAGACATGCAAAAG----AA---GAGCTTCTT-TCATTTGC    674

BSNT_00744___    675 GGACAAAGCCGCCGCTCCGATCGTTGTTACACTCCCGGCAAAAGGTGTCG    724
                     .||.||.||.||.|||||.|||||..|.||||||||.||||||||.||.|
BPUM_0407___y    675 AGAAAAGGCAGCTGCTCCTATCGTCATCACACTCCCTGCAAAAGGGGTTG    724

BSNT_00744___    725 TTCCCGATAAGCACCCGCATTTTCTCGGCAACCTCGGGCAGATCGGAACA    774
                     |.||.||||.|||.||..|.|||.|.||.|||.|.||.||.||.|||||.
BPUM_0407___y    725 TACCAGATAGGCATCCATACTTTTTAGGTAACTTAGGTCAAATTGGAACG    774

BSNT_00744___    775 AAGCCGGCTTACGAGGCAATGGAGGAATGTGATTTATTAATCATGCTCGG    824
                     ||||||||.||.||.||.|||||.|||||||||.|.|||||.|||||.||
BPUM_0407___y    775 AAGCCGGCATATGAAGCGATGGAAGAATGTGATCTCTTAATTATGCTTGG    824

BSNT_00744___    825 AACATCATTCCCGTACCGTGATTATTTGCCTGATGACACGCCGGCAATCC    874
                     .||.||.||.||.||..|.||.||.||.||.||.|||||||..||.||.|
BPUM_0407___y    825 CACCTCCTTTCCATATAGAGACTACTTACCAGAGGACACGCAAGCCATTC    874

BSNT_00744___    875 AGCTCGAT------TCAGACCCGGCAAAAATCGGAAAACGGTATCCGGT-    917
                     |.||.|||      .||||.|      |||||||.|||.|||||||||| 
BPUM_0407___y    875 AACTGGATATTAAACCAGATC------AAATCGGTAAAAGGTATCCGGTA    918

BSNT_00744___    918 GACAGCGGGCCTTGTCTGCGATTCGGC-----TCTCGGTCTGCGCGAATT    962
                     || .|.|||..||||..||||  |.||     |   |||.|||..|||.|
BPUM_0407___y    919 GA-TGTGGGAATTGTGAGCGA--CAGCAAGAGT---GGTTTGCATGAACT    962

BSNT_00744___    963 GACAGAGTATATTGAACGCAAGGAAGACAGAAGATTCCT-GAATGCCTGC   1011
                     |||...|||.||||||...||.||..|..|..|.||.|| ||| ||.||.
BPUM_0407___y    963 GACTTCGTACATTGAATATAAAGAGCAGCGTGGCTTTCTCGAA-GCTTGT   1011

BSNT_00744___   1012 ACAGAACATATGCAGCATTGGTG-GAACGAAATTGAAAAAGATGAGACAG   1060
                     |||||.||||||..|.|.|||.| ||| |||||.||.|||||..|..|.|
BPUM_0407___y   1012 ACAGAGCATATGATGAAGTGGCGAGAA-GAAATGGATAAAGAAAAATCTG   1060

BSNT_00744___   1061 AGGCAACAACACCGCTTAAACCTCAGCAGGTCGTGGCCCGTCTTCAGGAA   1110
                     ..||.||..|||||.|||||||.|||||.|||.|.||..|.||..|.|||
BPUM_0407___y   1061 TTGCTACTTCACCGATTAAACCACAGCAAGTCATTGCTAGACTAGAAGAA   1110

BSNT_00744___   1111 GCGGCAGCCGATGATGCGGTGCTCTCTGTCGATGTCGGCACTGTGACAGT   1160
                     ||.|..|..||.||.||..|.||.||.||.|||||.||.|.|||||||||
BPUM_0407___y   1111 GCAGTCGAGGACGACGCCATTCTTTCAGTTGATGTTGGTAATGTGACAGT   1160

BSNT_00744___   1161 CTGGATGGCGCGTCATTTCAAAATGAACGCGAAC--CAGGATTTCATCGT   1208
                     .|||||||||||||||||..||||||     |||  |||||||||||..|
BPUM_0407___y   1161 ATGGATGGCGCGTCATTTTGAAATGA-----AACAGCAGGATTTCATTAT   1205

BSNT_00744___   1209 CTCCAGCTGGCTTGCGACAATGGGCTGCGGCCTGCCGGGAGCGATCGCCG   1258
                     |||||||||||||||.||||||||.|||||..|.||.||.|||||..|.|
BPUM_0407___y   1206 CTCCAGCTGGCTTGCCACAATGGGTTGCGGTTTACCTGGTGCGATTTCAG   1255

BSNT_00744___   1259 CAAGCTTGTCCGAACCGGAACGCCAGGCGATCGCTGTCTGTGGTGACGGG   1308
                     |.|..|||...||||||.|.||.||.||.||.||.||.||||||||.||.
BPUM_0407___y   1256 CTAAATTGAATGAACCGAACCGACAAGCCATTGCCGTTTGTGGTGATGGT   1305

BSNT_00744___   1309 GGATTTTCCATGGTCATGCAGGATCTTCCGACCGCTGTCAAATATAAGCT   1358
                     ||.||..|.|||||||||||.||..||..|||..|.||.||||||||.||
BPUM_0407___y   1306 GGCTTCACAATGGTCATGCAAGACTTTGTGACATCGGTAAAATATAAACT   1355

BSNT_00744___   1359 CCCGATCACAGTCGTCATTTTAAACAACGAAAATCTTGGTATGATTGAGT   1408
                     .||.|||...||.||.||.|||||||||.||||.|||||.|||||.||.|
BPUM_0407___y   1356 GCCAATCGTTGTTGTGATCTTAAACAACAAAAACCTTGGAATGATCGAAT   1405

BSNT_00744___   1409 ACGAGCAGCAGGTCAAAGGCAATATCGACTATGTCACAAAACTTCAAAAT   1458
                     |.||.||.|||||.|||||.||.||..|.||||..|.|.|.||..|..||
BPUM_0407___y   1406 ATGAACAACAGGTAAAAGGAAACATGAATTATGGTATAGAGCTGGAGGAT   1455

BSNT_00744___   1459 GTCGACTATGCCGCATTTGCAGAAAGC-TGCGG-AGCAAAG---------   1497
                     .|.||.|..|||...||||||| |||| ||.|| .||||||         
BPUM_0407___y   1456 ATTGATTTCGCCAAGTTTGCAG-AAGCATGTGGCGGCAAAGGAATCTCCG   1504

BSNT_00744___   1498 -GGCATCAAAGTGACTAAAGCGGAAGAGCTTGCGCCGGCATTCCATGAGG   1546
                      |.|||||.|           .|||||..|.||.||.||.||..||...|
BPUM_0407___y   1505 TGTCATCACA-----------TGAAGAATTAGCTCCAGCCTTTGATACAG   1543

BSNT_00744___   1547 CGCTGCACTCTGACCAACCGGTCGTTGTGGATGTCATGAT-TGGA-AACG   1594
                     |.||.||.||.||..||||.|||.||.|.||||||  |.| |.|| ||.|
BPUM_0407___y   1544 CCCTTCAATCCGATAAACCAGTCATTATCGATGTC--GCTGTAGACAATG   1591

BSNT_00744___   1595 AACCGCCGCTTCCTGGCAAAATCACATACGGGCAGGCGAAAGGTTTTAGC   1644
                     ||||.|||.|.|||||.||||||||.|||...||.||...|||.||.||.
BPUM_0407___y   1592 AACCTCCGTTACCTGGGAAAATCACTTACACCCAAGCAGCAGGATTCAGT   1641

BSNT_00744___   1645 AAATACATGCTGAAAAACTTCTTCGAAAACCAAA----AAATTGAAATGC   1690
                     |||||..|..|||||||.|||||.|||    |||    |..|.||.||.|
BPUM_0407___y   1642 AAATATTTATTGAAAAAATTCTTTGAA----AAAGGTGAGCTGGATATTC   1687

BSNT_00744___   1691 CGTCACTGAAGAAAAGTTTGAAACGGTTATTTTAG   1725
                     |..||||.||||||||..|.|||||.||.||.||.
BPUM_0407___y   1688 CTCCACTCAAGAAAAGCCTCAAACGCTTTTTCTAA   1722


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