Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00768 and BPUM_0420

See Amino acid alignment / Visit BSNT_00768 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:32
# Commandline: needle
#    -asequence dna-align/BSNT_00768___ydbI.1.24716.seq
#    -bsequence dna-align/BPUM_0420___ydbI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00768___ydbI-BPUM_0420___ydbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00768___ydbI-BPUM_0420___ydbI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00768___ydbI
# 2: BPUM_0420___ydbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1098
# Identity:     730/1098 (66.5%)
# Similarity:   730/1098 (66.5%)
# Gaps:         120/1098 (10.9%)
# Score: 2252.5
# 
#
#=======================================

BSNT_00768___      1 ATGGCCGC-TTTAGTTAAATTTTTTC--AGCACCCGGGAGTAAGGCGTTT     47
                     |||||.|| |||  |||||.||.|||  |..|||| ||.||.|.|||.||
BPUM_0420___y      1 ATGGCAGCATTT--TTAAAATTGTTCGAAAAACCC-GGTGTTAAGCGGTT     47

BSNT_00768___     48 CTCCATCTTTGTCGTGTTAACTGGTGTGTTATATCTATTTAAGA-GCATG     96
                     .||..|.|||||.||.|||.|....|..||||||||| |||||| |.|||
BPUM_0420___y     48 TTCTGTATTTGTAGTATTAGCCACAGCCTTATATCTA-TTAAGAGGAATG     96

BSNT_00768___     97 ATCAACTTAATATTGCTT-ACCTTTATTTTCACATTTCTAATGGATCGTT    145
                     ||.||.||||| |..||| |||||.||.|||||.|||.|.|||.||||.|
BPUM_0420___y     97 ATGAATTTAAT-TCTCTTGACCTTCATATTCACCTTTTTGATGAATCGGT    145

BSNT_00768___    146 TGGAGCTTGTCGT--GCGGCAGTTTGTAAGCCGGTTCTTCCGCGTGA---    190
                     |.||....|||.|  |.|||  |||.||||.||   |||||   |||   
BPUM_0420___y    146 TAGAAGAGGTCATTAGAGGC--TTTTTAAGTCG---CTTCC---TGAAAA    187

BSNT_00768___    191 ---GCCAG----CGGGTTGTCATTACGTTTCTTTACATTTTGCTGGCT-G    232
                        |.|||    ||    ||.|||||..||.|.||.|||.|..||||| |
BPUM_0420___y    188 TAGGGCAGAAATCG----GTTATTACCATTTTGTATATTCTTTTGGCTGG    233

BSNT_00768___    233 TGCTGCTT-ACAGTCGGGGGCTTTGTGTTTTATCCGGTCGTCGCGGCGCA    281
                     ||  |.|| ||..|.||.||.||.||||||...||..||.||||....||
BPUM_0420___y    234 TG--GATTGACGTTTGGCGGATTCGTGTTTGTGCCAATCATCGCCAAACA    281

BSNT_00768___    282 GATCCAGCAGCTGGTT---------AAGCAGATTAAACATATTGCGTATC    322
                     |.|..||||.||..||         |||      |||   |||||..|.|
BPUM_0420___y    282 GGTGGAGCAACTATTTCATTTAGGAAAG------AAA---ATTGCAGACC    322

BSNT_00768___    323 ACCCTGACAGCAT---CCCTTTCTTTGATGAGATCACCAGTGTCTTCGGA    369
                     |.||  |||..||   ||| ||||||||||..|||||||..||.||||||
BPUM_0420___y    323 ATCC--ACAAAATTTACCC-TTCTTTGATGTCATCACCAACGTATTCGGA    369

BSNT_00768___    370 GATATT--AACATCAG-TTCATATGTCAAAG-AAGGCTTCAATGTAGTGT    415
                     |||.||  ||.||||| ||..|.||    || ||||.||.|||.|..|.|
BPUM_0420___y    370 GATTTTAAAATATCAGCTTACTTTG----AGAAAGGGTTTAATTTCCTCT    415

BSNT_00768___    416 ATACGTATCTGGCCGATATCAGCACATTCGGCTTGCAGGTCGTGATGGCG    465
                     ||||.||..|..|.|||.||||.||.|||.|..|.||.|||.|.|||.|.
BPUM_0420___y    416 ATACATACTTAACAGATTTCAGTACGTTCAGTATCCAAGTCATTATGTCC    465

BSNT_00768___    466 CTCATTCTCAGCATGTTTTTCTTATTTGAGAAAAAACGGCT--TTCTGAA    513
                     .|.||..|.||||||||.|||.|.||.||.|||.||||.||  |||  ||
BPUM_0420___y    466 TTAATATTAAGCATGTTCTTCCTGTTCGAAAAAGAACGCCTCATTC--AA    513

BSNT_00768___    514 TTCATGGCGAAATTTAAAACGAGCAAA----CTGAGGGTCTTTTATGAGG    559
                     ||||||...||.||.||||||||.|||    ||    ||.||.|||.|.|
BPUM_0420___y    514 TTCATGAACAAGTTCAAAACGAGTAAAATCTCT----GTGTTCTATCACG    559

BSNT_00768___    560 AAATTGCTTTTTTTGGAAGCAAATTTGCAAGAACGTTCGGCAAGGTGCTC    609
                     ||||.||.||.||||||.|.||||||.|.|||||||||||.|||||.|||
BPUM_0420___y    560 AAATCGCCTTCTTTGGACGTAAATTTTCCAGAACGTTCGGAAAGGTACTC    609

BSNT_00768___    610 GAGGCTCAATTTATCATTGC-GCTCGTCAACTGTATTCTGACGTTTATCG    658
                     ||.||.||.|||||.||||| .|| ||.||||||.||.|.||....||.|
BPUM_0420___y    610 GAAGCACAGTTTATTATTGCAACT-GTTAACTGTGTTTTAACAACCATTG    658

BSNT_00768___    659 CGCTTTGGATTATGCATTTTCCGCAGCTGTTTGGGCTTTCGATTATGGTG    708
                     ||||..|.||||||...||.||.||..|.|||||..|..||.|.|||||.
BPUM_0420___y    659 CGCTAGGTATTATGGGATTCCCTCAATTATTTGGATTAGCGGTCATGGTC    708

BSNT_00768___    709 TTCTTCCTTGGGTTGATCCCTGTAGCAGGCGTCGTCATTTCCCTGATTCC    758
                     ||.||.||.||.||.|||||.||.|||||.||.||.||.||.||.|||||
BPUM_0420___y    709 TTTTTGCTAGGCTTAATCCCAGTCGCAGGTGTGGTTATCTCACTTATTCC    758

BSNT_00768___    759 GCTCAGCATTATCGCCTACA-GCACTGGCGGCGGAATGTATGTGCTCTAC    807
                     .||||||||.||.||.||.| || .|||.|||||.||||||||.||.||.
BPUM_0420___y    759 CCTCAGCATCATTGCGTATACGC-TTGGGGGCGGCATGTATGTCCTGTAT    807

BSNT_00768___    808 ATTGTCCTTGTCATATTCGCCATTCATGCGATCGAAACATATTTCTTAAA    857
                     ||.||.|||||.||..||..|||.|||||.||.|||.|.|||||||||||
BPUM_0420___y    808 ATCGTGCTTGTGATCGTCATCATCCATGCCATTGAAGCCTATTTCTTAAA    857

BSNT_00768___    858 TCCGAAGCTGATGTCGGCGAAAACAGAGCTGCCAATCTTTTTCACCTTCA    907
                     .||||||||.|||||.||.||||||||.||.||.||.||.|||||.||.|
BPUM_0420___y    858 CCCGAAGCTCATGTCAGCAAAAACAGAACTCCCTATTTTCTTCACATTTA    907

BSNT_00768___    908 CTGTACTCATTTTCTCTGAACACTTTTTCGGCATTTGGGGTTTAATTATC    957
                     .|||.||.||.|||||||||||||...||||.||||||||..|.|||||.
BPUM_0420___y    908 TTGTGCTGATCTTCTCTGAACACTACATCGGGATTTGGGGACTCATTATT    957

BSNT_00768___    958 GGGATTCCGATCTTTGTGTTTCTCCTTGATATTCTGGATGTCACCAACAA   1007
                     ||.||.||.||||||||||||.|.||.||||||.||||.|||||||||||
BPUM_0420___y    958 GGTATACCAATCTTTGTGTTTATTCTAGATATTTTGGAGGTCACCAACAA   1007

BSNT_00768___   1008 GGAAGATAG--GTCTAAAGGACCCCGAGAGAATAGCGATAAAAAGTAG   1053
                     |||.||.||  || |||                               
BPUM_0420___y   1008 GGAGGAAAGTAGT-TAA-------------------------------   1023


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