Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00770 and BPUM_0422
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:32
# Commandline: needle
# -asequence dna-align/BSNT_00770___ydbJ.1.24716.seq
# -bsequence dna-align/BPUM_0422___ydbJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00770___ydbJ-BPUM_0422___ydbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00770___ydbJ-BPUM_0422___ydbJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00770___ydbJ
# 2: BPUM_0422___ydbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 985
# Identity: 625/985 (63.5%)
# Similarity: 625/985 (63.5%)
# Gaps: 116/985 (11.8%)
# Score: 1735.0
#
#
#=======================================
BSNT_00770___ 1 ATGG---CTGAGCCGATTTTACA--TATTGAAGGCCTCGATAAAAAGATT 45
.||| ||| |..|||||.| ||..|||.| ||||||||...|||
BPUM_0422___y 1 TTGGAGTCTG---CTGTTTTAAAGGTAGAGAAAG--TCGATAAACGAATT 45
BSNT_00770___ 46 GGGTCTAAACAGATTTTAAAACAGATCAGCATGGATGTCATGG-AGGGTG 94
||....|||...||.|||.||.|.||...|||.||..| |.|| ||||.|
BPUM_0422___y 46 GGCCGGAAAATAATCTTACAAGATATATCCATAGAAAT-AGGGAAGGGAG 94
BSNT_00770___ 95 AAATCATCGGCCTACTCGGTCCGAATGGTTCCGGAAAAACAACACTCATC 144
|||||.|||||.||||.||.||.|||||.||.|||||||||||..|.||.
BPUM_0422___y 95 AAATCGTCGGCTTACTAGGGCCAAATGGCTCTGGAAAAACAACCTTGATT 144
BSNT_00770___ 145 CGTATCATCGTCGGGCTGCTGAAACAAAACAGCG---GAAGCGTGA-CAA 190
|||.|.|||||.||..||.||||..||||||.|| |||.|.||| |||
BPUM_0422___y 145 CGTTTGATCGTTGGCTTGATGAAGAAAAACAACGGGCGAATCATGATCAA 194
BSNT_00770___ 191 TCAGCGGATTC-CAGCATGATACAGAGTTTGAAAAAGCGATGGAAGCGGT 239
| |.|.|||| |||.|||| |||.|||..|.|.||||||..|.|.||
BPUM_0422___y 195 T--GGGTATTCACAGGATGA---AGATTTTCGACATGCGATGTCATCTGT 239
BSNT_00770___ 240 TGGAGCGATTGTTGAGAACCCTGAGTTCTATCCGTACCTGACAGGCTGGG 289
|||.||.||..|.||.||.||.||.||.|||.|.||..|.|||||||..|
BPUM_0422___y 240 TGGTGCAATCATAGAAAATCCCGAATTTTATTCTTATTTAACAGGCTTTG 289
BSNT_00770___ 290 AAAACCTCAAGCACTTTGCGAATATGCACAAAAAAATAGCGGATGAACGG 339
|||||||..|.|..|.||||...||||||||...|.|..||||.|||||.
BPUM_0422___y 290 AAAACCTTGAACTGTATGCGGCGATGCACAATGGAGTGACGGAGGAACGA 339
BSNT_00770___ 340 CTTGATGAAGTGGTGGAACGTGTCGGGCTGACGTCA-GCGATTCATGATA 388
.|..||||||||||..||.|.||..|.|||..| || ||.||||||.|.|
BPUM_0422___y 340 ATGCATGAAGTGGTCAAAAGAGTTCGTCTGGAG-CACGCCATTCATCAGA 388
BSNT_00770___ 389 AGGTAAAAACCTATTCCCTTGGGATGCGCCAGCGTCTGGGGATCGCCCAG 438
||||.||.||||||||.||.||||||...||..|.||.|||||.||.||.
BPUM_0422___y 389 AGGTGAAGACCTATTCACTGGGGATGAAACAAAGGCTTGGGATTGCGCAA 438
BSNT_00770___ 439 GCAATTCTTCACCGGCCGAAGCTCCTCATTCTAGATGAACCGACAAACGG 488
||.||..|.||.|.|||.||.||.||||||.||||||||||||||||.||
BPUM_0422___y 439 GCCATATTACATCAGCCAAATCTGCTCATTTTAGATGAACCGACAAATGG 488
BSNT_00770___ 489 CCTAGACCCTGCGGGGATGAAGGATTTTCGCGATCATATT--AAAGAGCT 536
.||.||.|||||.||.||||||||.||..|.||.|| .|| |||.| ||
BPUM_0422___y 489 ACTTGATCCTGCCGGTATGAAGGAGTTCAGGGAGCA-CTTGCAAACA-CT 536
BSNT_00770___ 537 ----CGCAGAAATGGAAGGAACAGCTGTCCTGTTCGCCACTCATTTATTG 582
|| |||| ||||||||..|.|||.|.||.||.||.|||||||||
BPUM_0422___y 537 AGTGCG-AGAA---GAAGGAACGTCCGTCTTATTTGCTACACATTTATTG 582
BSNT_00770___ 583 CGCGAGGTTGAAGACTTGTGCGACCGTGTCATTATCATTCAAAAAGGTGA 632
|..|||||.|||||..|.||.|||||..|.||.||||||||||||||.||
BPUM_0422___y 583 CATGAGGTAGAAGAGCTATGTGACCGCATGATCATCATTCAAAAAGGAGA 632
BSNT_00770___ 633 GATCAAAGCGGAAGT--CA-GCTT----ACAAGGAACTGGCCAAACCACA 675
||||||||| .||| || |||| |||..|| ||..|||..|||
BPUM_0422___y 633 GATCAAAGC--TAGTACCATGCTTCGTGACATAGA---GGGGAAAGAACA 677
BSNT_00770___ 676 GAAAAAGCGATTATAGAA-GTGCAGCCGCAAGAAAAAGCGCTCAATTGGC 724
|| .|.|.|| ||| .|.|||||....|||||.||..|.|..||||
BPUM_0422___y 678 GA-----TGCTCAT-GAATATTCAGCCAGTGGAAAAGGCAGTGACGTGGC 721
BSNT_00770___ 725 T---GACA---GGCAATCAATATCAAGCTGAGAGCCAAGACGGGACG--- 765
| |||| |.|.||..||||.|| |.|.|.||..||
BPUM_0422___y 722 TCGAGACACATGACTATACATATGAA---------CGAAATGGATCGCAT 762
BSNT_00770___ 766 ATTGTAGTTGAGGTGGCAAAAGAAAACATACCGGAGCTGAACCGATCA-C 814
.||.||.||.|..||...|||||..|..|.||.|||||||| |.|.|| |
BPUM_0422___y 763 GTTTTACTTCAATTGAACAAAGAGCAAGTGCCTGAGCTGAA-CAAACAGC 811
BSNT_00770___ 815 TTGT-CGGACAAGATCTGAATGTATTTTCCATTACGCCTTACACGCAGTC 863
|||| |.|.|..|.|.|| |||||.||...||.||.|||.|.|.||..||
BPUM_0422___y 812 TTGTACTGGCTGGGTTTG-ATGTACTTGAAATGACACCTCAAAAGCCATC 860
BSNT_00770___ 864 ACTGGAAGACGAATTTATAAAAGCGAC--AA------------------- 892
|.|.|||||.|.||||||.|||..||| ||
BPUM_0422___y 861 AATTGAAGAGGCATTTATGAAATGGACGGAAGGCGGGACGGCAGATGCTT 910
BSNT_00770___ 893 CAGCTCATCAAGAGGAGGGAGAAGAGCTTGTCTAA 927
||.|||||||||| |.||
BPUM_0422___y 911 CAACTCATCAAGA--------ATGA---------- 927
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