Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00783 and BPUM_0427
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:33
# Commandline: needle
# -asequence dna-align/BSNT_00783___ddl.1.24716.seq
# -bsequence dna-align/BPUM_0427___ddl.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00783___ddl-BPUM_0427___ddl.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00783___ddl-BPUM_0427___ddl.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00783___ddl
# 2: BPUM_0427___ddl
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1128
# Identity: 811/1128 (71.9%)
# Similarity: 811/1128 (71.9%)
# Gaps: 87/1128 ( 7.7%)
# Score: 2854.0
#
#
#=======================================
BSNT_00783___ 1 TTGAAAACAAGTCTAGGATTAGTGTACGGAGGAAAGTCGGCAGAACATAA 50
|||||||.||||.|||||||..|.|||||.||||||||.||.||||||||
BPUM_0427___d 1 TTGAAAATAAGTTTAGGATTGATTTACGGCGGAAAGTCAGCCGAACATAA 50
BSNT_00783___ 51 TGTTTCCCTGCAGACGGCTCTGGCTGTAATCAAAGCGCTAAATACTGAGA 100
|||.||.|||||.||.||.||.||.||.|..|||||.||.||.|||||||
BPUM_0427___d 51 TGTATCACTGCAAACAGCCCTTGCAGTTACAAAAGCACTTAACACTGAGA 100
BSNT_00783___ 101 AGTTTGATATACATCCGATTTATATAACAGAAAAAGGCGAATGGGTAAGA 150
||||.|||||||||||.||||||||.||||||.|.|||||||||.|||||
BPUM_0427___d 101 AGTTCGATATACATCCAATTTATATTACAGAAGAGGGCGAATGGCTAAGA 150
BSNT_00783___ 151 GGCG-----CCCGTTTAACTGAGCCTGTTTCAAATGTGAAAATGCTTCAA 195
||.| | |.|||||.||.||.|||||.||.|.||||||||||
BPUM_0427___d 151 GGAGAAAAAC-----TCACTGAACCAGTATCAAACGTCAGAATGCTTCAA 195
BSNT_00783___ 196 TTTGAGCAAGGAGGCAGTG-CTTTTTCTCCAGCTGCCCTGAACCAGGAG- 243
|||||.| ||.|.|||..| |.||||..||..||.|..|.|||.| |||
BPUM_0427___d 196 TTTGAAC-AGAATGCAAAGACGTTTTTACCGACTTCTTTAAACGA-GAGC 243
BSNT_00783___ 244 ATGTTTCCGCAGGAAGCGTCACAGCAAA---------AT--GAAGCCATC 282
||||||| ||||||..| || |||| ||.
BPUM_0427___d 244 ATGTTTC------------CACAGCCTACATCTGCTGATGAGAAG--ATT 279
BSNT_00783___ 283 GACGTCGTATTCCCGCTCCTCCACGGACCGAATGGAGAAGACGGTACGAT 332
||.||.||.||.||..|..|.|||||.||.|||||.|||||.||.|||||
BPUM_0427___d 280 GATGTTGTCTTTCCATTATTGCACGGGCCAAATGGTGAAGATGGAACGAT 329
BSNT_00783___ 333 CCAGGGAATGCTTGAGCTGTTGAACATTCCTTATGTCGGCAACGGAGTGC 382
.||.|||.|.|||||.|||.||||.||.||.||||||||||||||.||.|
BPUM_0427___d 330 GCAAGGATTACTTGAACTGCTGAATATCCCGTATGTCGGCAACGGCGTTC 379
BSNT_00783___ 383 TTGCTTCCTCAGCTGGGATGGATAAAGTTGTCATGAAACATTTATTTGCG 432
|||||||..|.||.||.|||||||||||..|.||||||.||.|.|||||.
BPUM_0427___d 380 TTGCTTCTGCCGCGGGTATGGATAAAGTCATGATGAAAGATGTTTTTGCT 429
BSNT_00783___ 433 CAGGCTGGCCTTGCTCAGGCTAAATACGCAGCTTTCCT----TAAGAAAG 478
||.||.||.|||||.||.||.|| |||.||||||| |||.||||
BPUM_0427___d 430 CAAGCAGGACTTGCACAAGCAAA----GCACCTTTCCTTCAATAAAAAAG 475
BSNT_00783___ 479 ACT-GGACTCGTTCTCCGAA---------AGAAAGCTGTGAGCAGGTTGA 518
||| .|| ||| |||.||||..||.|||||.||
BPUM_0427___d 476 ACTATGA----------GAAAGCCACACCAGACAGCTTAGAACAGGTGGA 515
BSNT_00783___ 519 ACAGGAATTAGGCTACCCTTGCTTCGTAAAACCGGCGAACCTCGGCTCAA 568
|||.|.|.|.|||||.||.|||||.||.|||||.||.|||.|.||.||||
BPUM_0427___d 516 ACAAGTACTTGGCTATCCATGCTTTGTGAAACCTGCCAACATGGGATCAA 565
BSNT_00783___ 569 GTGTTGGAATCAGCAAATGCCG----AAACCGTGAAGAACTGCAAAAAGC 614
||||||||||.||||||||.|| ||| |||||.|||||||..||
BPUM_0427___d 566 GTGTTGGAATAAGCAAATGTCGCAGCAAA----GAAGAGCTGCAAACGGC 611
BSNT_00783___ 615 GTTTGAGCTT-GCTTTCCAATATGACCGCAAAGTCGTCGTTGAAGAAGGA 663
.||.|| ||| ||||||||||||||.||....||.|||||.||||||||.
BPUM_0427___d 612 ATTCGA-CTTGGCTTTCCAATATGATCGACGTGTGGTCGTAGAAGAAGGC 660
BSNT_00783___ 664 AT--TAACGGCCGCGAGATTGAGATCGGCGTTCTTGGAAATGACGATCCT 711
.| || ||..|.||.||.|||||.||.||..|.|||||||||||.||.
BPUM_0427___d 661 GTCGTA--GGAAGAGAAATCGAGATTGGTGTATTAGGAAATGACGAGCCA 708
BSNT_00783___ 712 AAATGCTCTGTTGTGGGAGAAATCGCACCGAAGACAGATTTCTACGATTA 761
|||||||||||.||.||.|||||.|||||.||.||||||||.||.||.||
BPUM_0427___d 709 AAATGCTCTGTCGTTGGTGAAATTGCACCTAAAACAGATTTTTATGACTA 758
BSNT_00783___ 762 CAAAGCGAAATATGAGGATGGAGATACTGATCTGATGATTCCGGCAATTG 811
||||||.||||||||.|||||.|||||.|||.||||.|||||.||||.||
BPUM_0427___d 759 CAAAGCAAAATATGAAGATGGCGATACAGATTTGATCATTCCTGCAAGTG 808
BSNT_00783___ 812 TGACCGATGAGGA--ATACGCTAC-AATCAGTGATATGGCGATCAAGGCG 858
||.|.||.||.|| |||.| || |.||| ||||||||||||.|||||.
BPUM_0427___d 809 TGTCAGAGGATGAGTATAAG--ACGATTCA-TGATATGGCGATTAAGGCA 855
BSNT_00783___ 859 TTTAAAGCGATCGATGGTTCAGGACTCGTCAGAGCGGACTTTTTCCTGAC 908
||||||.|..|.||||||||.||.||.||..|.||.|||||.|||||.||
BPUM_0427___d 856 TTTAAATCCCTAGATGGTTCTGGTCTTGTACGTGCAGACTTCTTCCTTAC 905
BSNT_00783___ 909 AGCTGACGGCGAAGTTCTGATCAATGAAGTCAACACAATGCCTGGCTTTA 958
||...|.||||||||..|||||||||||||.||.|||||||||||.||.|
BPUM_0427___d 906 AGAAAAAGGCGAAGTGTTGATCAATGAAGTGAATACAATGCCTGGATTCA 955
BSNT_00783___ 959 CACCTTTCAGCATGTTCCCGCTGCTCTGGAAAGAAGCCGGAGTGGAATAT 1008
||||.||.||.||||||||||||||.|||||..|..|.||.||.||.||.
BPUM_0427___d 956 CACCATTTAGTATGTTCCCGCTGCTTTGGAAGCACACTGGTGTAGAGTAC 1005
BSNT_00783___ 1009 GCTGACCTGATTGAACAGCTTGTGGAGCTTGCAAAAGAACGCCACGCTGA 1058
.|.||.||.||||||.||||.|||...|||||||..||||||||....||
BPUM_0427___d 1006 CCAGAGCTCATTGAAAAGCTAGTGTCACTTGCAATTGAACGCCATCAAGA 1055
BSNT_00783___ 1059 AAAACAATTGATTAAGCATACATTCTAA 1086
|||||||...|||||....||.||.|||
BPUM_0427___d 1056 AAAACAAACCATTAAAACGACTTTTTAA 1083
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