Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00788 and BPUM_0432

See Amino acid alignment / Visit BSNT_00788 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:33
# Commandline: needle
#    -asequence dna-align/BSNT_00788___ydbS.1.24716.seq
#    -bsequence dna-align/BPUM_0432___ydbS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00788___ydbS-BPUM_0432___ydbS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00788___ydbS-BPUM_0432___ydbS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00788___ydbS
# 2: BPUM_0432___ydbS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 519
# Identity:     338/519 (65.1%)
# Similarity:   338/519 (65.1%)
# Gaps:          78/519 (15.0%)
# Score: 1039.5
# 
#
#=======================================

BSNT_00788___      1 TTGAGAGAGCAGCCAAAAAACCAAATCAGTCCAGACGGATTAAAGGTTTG     50
                     .|||||.|.|||||..||...|||||.|||..|.|.||.||||||||.||
BPUM_0432___y      1 GTGAGAAAACAGCCGCAACGTCAAATTAGTTTAAATGGTTTAAAGGTATG     50

BSNT_00788___     51 GCGACTTCAA----GAGATCATCATATCCGCTG-TTTGCTTGCTTATTGT     95
                     |||.||||||    || ||||||..||    || |||.|||.||.||..|
BPUM_0432___y     51 GCGCCTTCAAAATGGA-ATCATCTCAT----TGATTTTCTTACTCATCAT     95

BSNT_00788___     96 CATTGCAG--TTGCAGTGTT--AAGCTATTATTTTCATTGGCCGTACTGG    141
                     |||||..|  ||    ||||  .||.||||||.|||||||||||||.|||
BPUM_0432___y     96 CATTGGGGTATT----TGTTGCTAGTTATTATCTTCATTGGCCGTATTGG    141

BSNT_00788___    142 ATCAGCGGCGTGCTCGGCGCAGTTTGGCTGCTGGGATC-----GATTGTG    186
                     ||..|.|.|.|.|||..||  ||||     .|||| ||     |.||   
BPUM_0432___y    142 ATTGGTGCCATCCTCACCG--GTTT-----ATGGG-TCTTACAGGTT---    180

BSNT_00788___    187 ACGGTCTTTATCATT---------CCGAAGGTCCGTCATAAGGTGTGGCG    227
                        ||.|||..||||         |||||..||||||||....|.|||||
BPUM_0432___y    181 ---GTTTTTGGCATTTGGCTTATACCGAAAATCCGTCATCGCATCTGGCG    227

BSNT_00788___    228 ATATGAAGTCCAT--GAACATGAAATAGATATTCAG-------TCAGGTA    268
                     .||.|||||  ||  |||.|||||||.||.||||||       |||    
BPUM_0432___y    228 TTACGAAGT--ATTCGAAAATGAAATCGAAATTCAGCATGGGCTCA----    271

BSNT_00788___    269 TTTTTGTGGTGACACGTGTGATTGTTCCGATGGTCAGAGTTCAGCACGTC    318
                       ||.|| ||.||||||||||||||.||||||||..|.||.|||||.|||
BPUM_0432___y    272 --TTCGT-GTCACACGTGTGATTGTACCGATGGTGCGTGTCCAGCATGTC    318

BSNT_00788___    319 GATACGTCACAAGGGCCATTATTAAAAAAATA----CAACC---TGGCAA    361
                     |||||.||||||||||||.|.|||       |    |.|||   ||||..
BPUM_0432___y    319 GATACATCACAAGGGCCACTCTTA-------AGGCGCTACCGTTTGGCTT    361

BSNT_00788___    362 CGGTGAAAATTTCCACGGCCGCGACCGTTCATTCGATCCCCGCTTTAGAG    411
                     |.||..||||.||.||.||.||.||.||||||...||.||.||..||||.
BPUM_0432___y    362 CTGTTCAAATATCGACTGCTGCCACAGTTCATGATATACCGGCGCTAGAA    411

BSNT_00788___    412 ATGGAGGAAGCGGATCGGCTGAGAGACTCCATTTCCCGTCTGGCGAGGGT    461
                     .|.||.|||||.|||..|||..|.||.|.|||.||.|||.|.||.|||||
BPUM_0432___y    412 TTAGAAGAAGCAGATGAGCTTCGTGATTACATATCTCGTTTAGCAAGGGT    461

BSNT_00788___    462 GACTGACGATGATGTCTGA    480
                     |||.||.||||||||||||
BPUM_0432___y    462 GACGGAAGATGATGTCTGA    480


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