Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00791 and BPUM_0434

See Amino acid alignment / Visit BSNT_00791 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:33
# Commandline: needle
#    -asequence dna-align/BSNT_00791___ydcA.1.24716.seq
#    -bsequence dna-align/BPUM_0434___ydcA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00791___ydcA-BPUM_0434___ydcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00791___ydcA-BPUM_0434___ydcA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00791___ydcA
# 2: BPUM_0434___ydcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity:     405/671 (60.4%)
# Similarity:   405/671 (60.4%)
# Gaps:         136/671 (20.3%)
# Score: 1095.0
# 
#
#=======================================

BSNT_00791___      1 ATGTTTATACGGACTGAAAATTTTCAAACATTTATCAGGCTTTACCCCGT     50
                     ||||||||.||.||.||.|..||||||..||||||.||....||.||..|
BPUM_0434___y      1 ATGTTTATTCGAACGGAGAGCTTTCAACAATTTATTAGATCATATCCAAT     50

BSNT_00791___     51 TGTCA-------CCTTTATATTGGCTTTGCAAGCTGTTCTCTGGCTGTTT     93
                     .||||       ||||       |||||||||..||.|.|.|||||..|.
BPUM_0434___y     51 CGTCACAACGATCCTT-------GCTTTGCAATTTGGTTTATGGCTTCTA     93

BSNT_00791___     94 TTTTCACTTCCT-GCCCATTCAGTCGTGTTATGGAG---GG--------A    131
                     |||.|.|||||| .|||         |.||||..||   ||        |
BPUM_0434___y     94 TTTGCGCTTCCTATCCC---------TCTTATCCAGCTTGGTCACGACCA    134

BSNT_00791___    132 TACCGTCACAGGCTATAATCTA-GGTGTCGCAAACGGTGAATGGTGGCGG    180
                     |..||||   ||.|..||| || |||||.||....||.|||||||||||.
BPUM_0434___y    135 TCTCGTC---GGTTTCAAT-TATGGTGTAGCTGCTGGAGAATGGTGGCGA    180

BSNT_00791___    181 CTGATCACACCGATTTTGCTGCACGCCGGTTTCACACATCTGCTGTTTAA    230
                     ||.||||||||..||||.||.||||...||.|.||.|||.|..||||.||
BPUM_0434___y    181 CTTATCACACCTGTTTTTCTTCACGGAAGTCTGACCCATATTTTGTTCAA    230

BSNT_00791___    231 TTCCATGTCCATCTTTTTATTTGCCCCAGCTTTGGAACGCA--TGCTGGG    278
                     |||.|||||..|.||.|||||.||.|||||..|.||  |||  ||||.||
BPUM_0434___y    231 TTCTATGTCATTGTTCTTATTCGCTCCAGCACTTGA--GCATTTGCTTGG    278

BSNT_00791___    279 AAAAG--------CGCATTTTCT-TCTT-GTATACGCCGGCTCCGGCATC    318
                     .||.|        |.||||.||| |||| ||    ||.||.|      ||
BPUM_0434___y    279 GAAGGTTCGATTTCTCATTATCTATCTTGGT----GCAGGAT------TC    318

BSNT_00791___    319 ATCGGCAATATTGGCACTTAT---GTTACAGAGCCGCTTGATTACGTGCA    365
                     ||.|||||..|.||.||.|||   ||   .|||||..|.||.||.||.||
BPUM_0434___y    319 ATTGGCAACCTCGGAACCTATTGGGT---GGAGCCTTTAGAGTATGTACA    365

BSNT_00791___    366 TGTCGGTGCTTCAGGCGCAATTTTCGGGCTATTCGGCGTGTACCTGTTTA    415
                     ||||||.||.||.||.||.||.|||||..|.||.|||||.||    ||||
BPUM_0434___y    366 TGTCGGCGCATCTGGTGCGATCTTCGGTTTGTTTGGCGTTTA----TTTA    411

BSNT_00791___    416 ----TGGTTCTTTTT----CGCA-ATGA------GCTAATAGGGCAGGAG    450
                         |.|||||.|||    |||| ||||      ||      ||||    
BPUM_0434___y    412 TACCTTGTTCTATTTAAACCGCATATGATGGATCGC------GGCA----    451

BSNT_00791___    451 CATTCCAAAATGATCATCACACTGCTCGCATTTGCCGTTCTCATGTCATT    500
                      ||||..|..|||||.|.||..|.|      |||||| |||| ||||| |
BPUM_0434___y    452 -ATTCTCAGGTGATCTTAACGATTC------TTGCCG-TCTC-TGTCA-T    491

BSNT_00791___    501 TA---------TCAACTCCAATATTAACATGATGGCTCATCTGTTTGGAC    541
                     ||         |||||||.||.||.||.||.||||||||..|.||||||.
BPUM_0434___y    492 TATGACGTTCGTCAACTCAAACATCAATATCATGGCTCACTTATTTGGAT    541

BSNT_00791___    542 T-ATGCGGCGGGTTTCT---------TCTTTCGTT--TTTGTGTGTGCAA    579
                     | || ||||||..|.||         ||||.||.|  ||| |...|.|||
BPUM_0434___y    542 TGAT-CGGCGGCATGCTCCTAGCACCTCTTACGCTAGTTT-TCCATTCAA    589

BSNT_00791___    580 AAAAAAGAGCGGCGGTATTAA    600
                     ||||||||    ||.||.|||
BPUM_0434___y    590 AAAAAAGA----CGCTACTAA    606


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