Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00794 and BPUM_0437
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:34
# Commandline: needle
# -asequence dna-align/BSNT_00794___alr.1.24716.seq
# -bsequence dna-align/BPUM_0437___alr.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00794___alr-BPUM_0437___alr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00794___alr-BPUM_0437___alr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00794___alr
# 2: BPUM_0437___alr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1264
# Identity: 782/1264 (61.9%)
# Similarity: 782/1264 (61.9%)
# Gaps: 179/1264 (14.2%)
# Score: 2105.0
#
#
#=======================================
BSNT_00794___ 1 ATGAGCACAAAACCTTTTTACAGAGATACGTGGGCGGAAATTGACTTGTC 50
|||..||||||..|.|||||.|||||.||.|||||.||||||.|.||.||
BPUM_0437___a 1 ATGGACACAAATGCCTTTTATAGAGACACATGGGCAGAAATTAATTTATC 50
BSNT_00794___ 51 CGCGATAAAGGAAAATG--TCAGCAATATGAAAAAACATATCGGTGAACA 98
.||.||.|||.|.|||| ||| .||||||||.|.|||||||||.||..
BPUM_0437___a 51 AGCAATTAAGCATAATGTTTCA--CATATGAAAGATCATATCGGTCAAAG 98
BSNT_00794___ 99 TGTCCACCTGATGGCAGTTGTGAAAGCAAACGCCTACGGGCATGGTGATG 148
|||.||.||.|||||.||.||||||||.||.||.||.||.|||||.|||.
BPUM_0437___a 99 TGTTCAACTAATGGCTGTGGTGAAAGCCAATGCATATGGACATGGAGATA 148
BSNT_00794___ 149 CAGAAACAGCAAAGGCTGCTCTTGACGCAGGTGC-----TTCATGCTTGG 193
.||||...||||..||||||||..|.||.||.|| || ||.|
BPUM_0437___a 149 TAGAAGTGGCAAGTGCTGCTCTCAAAGCGGGCGCAGACATT-----TTAG 193
BSNT_00794___ 194 CGGTGGCCATTTTGGATGAAGCGATTTCACTGCGTAA-AAAGGGATTGAA 242
|.||.|||.||||.|||||.||..||||..|..|.|| |||||.| |.||
BPUM_0437___a 194 CCGTCGCCTTTTTAGATGAGGCCGTTTCTTTAAGAAATAAAGGCA-TCAA 242
BSNT_00794___ 243 GGCGCCTATATTGGTGCTCGGCGCGGTTCCCCCGGAGTATGTGGCAA--T 290
.||.||.|||.|.||.||||||||.||.||..|.||.||||| ||| |
BPUM_0437___a 243 AGCACCAATACTTGTACTCGGCGCCGTACCGACTGAATATGT--CAAAGT 290
BSNT_00794___ 291 CGCTGCT-GAGTATGACGTGACCTTAACGGGTTATTCTGTTGAATGGCT- 338
|||.|.| || ||..|.||.|.|.|.||.|.|||.||..|.||.|||||
BPUM_0437___a 291 CGCCGTTCGA-TACAATGTCATCATGACCGCTTACTCCATCGATTGGCTG 339
BSNT_00794___ 339 ----------TCA-------GGAGGCTGCCCGCCACACGAAAAAAGGTTA 371
||| |||.| ||||.|.|..|.||..|
BPUM_0437___a 340 AAAGACGTCATCAACATGATGGAAG------GCCAGATGGGACAACCT-- 381
BSNT_00794___ 372 TCTTCAT----TTTCATCTGAAGGTCGATACGGGGATGAACAGGCTTGGT 417
|| ||||||.||||..|.||.|..||.||||||.|..|.|||
BPUM_0437___a 382 -----ATAAGATTTCATTTGAAAATAGACAGCGGAATGAACCGATTAGGT 426
BSNT_00794___ 418 GTAAAAAC---AGAGGAA------GAAGTTCAGAACGT----GATGGCCA 454
||.||||| ||||.|| |||||..|.||..| ||.|..||
BPUM_0437___a 427 GTGAAAACGATAGAGCAAGTGAACGAAGTGAAAAAGCTTGTCGACGAGCA 476
BSNT_00794___ 455 TTCTTGACCGCAACCCTCGTTTAAAG-TGCAAAGGGGTATTTACCCATTT 503
||||| .||||.|| || .||||.||||||||.||.||
BPUM_0437___a 477 TTCTT-------------ATTTACAGCTG-GAAGGCGTATTTACTCACTT 512
BSNT_00794___ 504 TGCGACAGCGGATGAAAAAGAAAGAGG-CTATTTCTTAAT--GCAGTTTG 550
|||||||||.|||| |||||.|.|||| |||.| ||.|| .|||.|||
BPUM_0437___a 513 TGCGACAGCAGATG-AAAAGGATGAGGCCTACT--TTGATCGCCAGGTTG 559
BSNT_00794___ 551 AGCGCTTT-AAAGAGCTGATTGCTCCGCTGC---CGTTAAAGAATCTGAT 596
|...|||| |||.| |||.|||..|||||.| ||...|||..|||.|
BPUM_0437___a 560 ACACCTTTCAAACA-CTGCTTGAGCCGCTTCATACGGACAAGCTTCTCA- 607
BSNT_00794___ 597 GGTCCACTGCGCGAACAGCGCCGCCGGACTCCGGCTGAAAAAAGGCTTTT 646
|.||.||.||.|||||.||.||.||..|..||.|.|||.|.|..||.|
BPUM_0437___a 608 --TTCATTGTGCCAACAGTGCAGCAGGTTTAAGGTTTAAAGACGTTTTGT 655
BSNT_00794___ 647 TTAATGCA--GTCAGATTCGGCATCGGCATGTATGGCCT-TCGCCCGTCT 693
|||| || ||..|.|||||||||.|.|||||.||.|| || .|||||.
BPUM_0437___a 656 TTAA--CATGGTTCGCTTCGGCATCAGTATGTACGGGCTGTC-ACCGTCA 702
BSNT_00794___ 694 GCTGACATTTCGGACGAGATACCGTTTC-AGCT-------GCGTCCGGCA 735
|..||.||...|||.|| ||..|.|||| |||| || ||
BPUM_0437___a 703 GAAGAAATCAAGGATGA-ATTGCCTTTCAAGCTTGAAGAAGC------CA 745
BSNT_00794___ 736 TTTACCCTGCATTCGACGCTGTCGCATGTCAAACTGA-TCAGAAAAGGCG 784
|.| |.||.|||.|||.|||..|.|||||.||.|..| ||| |||.||.|
BPUM_0437___a 746 TGT-CTCTTCATACGAAGCTTGCCCATGTGAAGCACATTCA-AAAGGGTG 793
BSNT_00794___ 785 AGAGCGTCAGCTACGGAGCCGAGTACACAGCAGAAAAAGACACATGGATC 834
||||.|||||||||||.||...|||.|||||..|..||||.||.||||||
BPUM_0437___a 794 AGAGTGTCAGCTACGGGGCAACGTATACAGCCAATCAAGATACGTGGATC 843
BSNT_00794___ 835 GGGACGGTGCCTGTAGGCTATGCGGACGGCTGG-CTCCGAAAATTGAAAG 883
||.|||||.||.||.||||||||.||.||.||| .||.|||..||| .||
BPUM_0437___a 844 GGCACGGTTCCAGTCGGCTATGCAGATGGATGGATTCGGAAGCTTG-CAG 892
BSNT_00794___ 884 GGACTGACATCCTTGTGAAGGGAAAACGCTTGAAAATTGCCGGCCGAATT 933
|.||.||..|.|||||....|||||.|||..|||.||..||||..|.|||
BPUM_0437___a 893 GAACGGAAGTACTTGTTGGCGGAAAGCGCCGGAAGATCACCGGAAGGATT 942
BSNT_00794___ 934 TGCATGGACCAATTTATGGTGGAGCTGGATCAGGAATA----TCC----- 974
||.|||||.|||||.|||||.||.|||.| || |.| |||
BPUM_0437___a 943 TGTATGGATCAATTCATGGTTGAACTGAA--AG--ACAAGCTTCCAGTGG 988
BSNT_00794___ 975 ----GCCGGGCACAAAAGTCACATTAATTGGCCGGCAGGGGGATGA---- 1016
|||| |||...||||||||...|||.||.||.||
BPUM_0437___a 989 GCGAGCCG---------GTCGTTTTAATTGGTAAGCAAGGCGAAGACATG 1029
BSNT_00794___ 1017 ATATATTTCCATGGATGAGATTGCAGGAAGGCTCGAAACCATTAACTATG 1066
|||.|..|| |||||.||.||...||||||.|||||||||||.||||
BPUM_0437___a 1030 ATACAAGTC----GATGAAATCGCCAAAAGGCTTGAAACCATTAATTATG 1075
BSNT_00794___ 1067 AGGTGGCCTGTACAATAAGTTCCCGTGTTCCCCGTATGTTTTTGGAAAAT 1116
|..|..|.||..|.||..||..|||.||.||..|..|||.|.|.||..|.
BPUM_0437___a 1076 AAATCACGTGCTCGATTGGTCACCGCGTCCCGAGAGTGTATATAGAGGAC 1125
BSNT_00794___ 1117 GGGAGTATAATGGAAGTAAGAAATCCTTTATTGCAGGTAAATACAAG--- 1163
||.|..|.|.|..||||..|.||||| |.|.| |.||||
BPUM_0437___a 1126 GGCAAAAGAGTTCAAGTGCGGAATCC---ACTCC-------TTCAAGGCG 1165
BSNT_00794___ 1164 ---CAA----TTAA 1170
||| ||.|
BPUM_0437___a 1166 GACCAAGTTTTTGA 1179
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