Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00815 and BPUM_0450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:35
# Commandline: needle
# -asequence dna-align/BSNT_00815___ydcK.1.24716.seq
# -bsequence dna-align/BPUM_0450___ydcK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00815___ydcK-BPUM_0450___ydcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00815___ydcK-BPUM_0450___ydcK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00815___ydcK
# 2: BPUM_0450___ydcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 520
# Identity: 302/520 (58.1%)
# Similarity: 302/520 (58.1%)
# Gaps: 113/520 (21.7%)
# Score: 843.5
#
#
#=======================================
BSNT_00815___ 1 ---ATGGATAATATAGAGCTTCAAAAGCTGACAGAGGATATTTCTAAAAC 47
|.|| |.|..|||||.||..||.|.|||||..|||||||| .|.|
BPUM_0450___y 1 TTGAAGG---AGAGCGAGCTACAGCAGTTAACAGAACATATTTCT-GAGC 46
BSNT_00815___ 48 A-TATTTTAAAAAGCCGTTCCGCCATCAGGCGCTTTTTAATGACAGGCTT 96
| |..|||...|||.|.||||||||.|||||..|||||||||||.|.||.
BPUM_0450___y 47 AGTTCTTTGGTAAGACATTCCGCCACCAGGCTGTTTTTAATGACCGTCTC 96
BSNT_00815___ 97 AAAACCACGGGCGGAAGGTACCTGTTAACCT----CTCATAACATTGAAT 142
|||||.||.|||||..|||| ||.||.| |.||.||.||.|||.
BPUM_0450___y 97 AAAACGACAGGCGGGCGGTA----TTTACTTGGAACACACAATATCGAAC 142
BSNT_00815___ 143 TGAACAGAAAATATCT-GATTGAACACGGCAGGGAGGAACTGATCGGCAT 191
|||||.|...|||.|| || .|||||.||..|.||.|||.|.|||||.||
BPUM_0450___y 143 TGAACCGCCGATACCTAGA-GGAACATGGACGAGAAGAATTAATCGGAAT 191
BSNT_00815___ 192 CATCAAGCACGAGCTCTGCCATTATCATCTTCACCTTGAAGGAAAAGGGT 241
|||||||||.|||||.||.|||||||||||.||.|||||.||.|||||.|
BPUM_0450___y 192 CATCAAGCATGAGCTGTGTCATTATCATCTGCATCTTGAGGGGAAAGGCT 241
BSNT_00815___ 242 ACAAGCACAGAGAC---------AGAGATTTTAGAATGCTTTTGCAGCAA 282
|..||||..|.||| |.||||| |.||.||.|||
BPUM_0450___y 242 ATCAGCATCGTGACCGTTCCTTTAAAGATT---------TATTACAACAA 282
BSNT_00815___ 283 GTCAACGCGCCGAGGTTCTGTACACCCCTTAAG----------AAAAAAG 322
||....||.|||.|.||.||||||||.||.||| |.|||||
BPUM_0450___y 283 GTAGGAGCCCCGCGTTTTTGTACACCGCTAAAGACCGTACAAAATAAAAG 332
BSNT_00815___ 323 -------CGGAAA--ACAAAAAAACTTATATGTATATCTGTACGGCCTGC 363
|.|||| ||||.|| |||.|.||.||.|..|||
BPUM_0450___y 333 ACGTGTACAGAAACGACAAGAA----------TATGTTTGCACAGGATGC 372
BSNT_00815___ 364 GGCCAACAGTATAT---AAAGAAGCGCGCCATGAACCCTGACAGATACAG 410
||.||..|.|.||| ||| ||| |||...|||..|||..| |.||...
BPUM_0450___y 373 GGTCAGTATTTTATTAGAAA-AAG-GCGAATTGATACCTCTC-GTTATGT 419
BSNT_00815___ 411 GTGCGG-------AAAATGCCGCGGAAAAATAAAA----AGAATTTTTTC 449
|||||| ||| ||||||.||||| || |
BPUM_0450___y 420 GTGCGGCGTCTGCAAA-------GGAAAATTAAAATGGCAG--------C 454
BSNT_00815___ 450 GTAA---------------- 453
|||.
BPUM_0450___y 455 GTACAATCGGTTCAGATTGA 474
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