Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01344 and BPUM_0451

See Amino acid alignment / Visit BSNT_01344 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:56
# Commandline: needle
#    -asequence dna-align/BSNT_01344___acoA.1.24716.seq
#    -bsequence dna-align/BPUM_0451___acoA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01344___acoA-BPUM_0451___acoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01344___acoA-BPUM_0451___acoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01344___acoA
# 2: BPUM_0451___acoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1026
# Identity:     716/1026 (69.8%)
# Similarity:   716/1026 (69.8%)
# Gaps:          72/1026 ( 7.0%)
# Score: 2427.0
# 
#
#=======================================

BSNT_01344___      1 AT-GAAATTGTTAAAACGAGAAGGCTTGTCATTAACTGAGGAAAAAGCGC     49
                     || ||||                   ||.||.|.||..|.||||||||..
BPUM_0451___a      1 ATGGAAA-------------------TGGCACTCACAAAAGAAAAAGCCG     31

BSNT_01344___     50 TGTGGATGTACCAAAAGATGCTGGAGAT----CAGGGGCTTTGAAGACAA     95
                     |.||||||||.|||||.||||.|||.||    ||    .||||||||..|
BPUM_0451___a     32 TTTGGATGTATCAAAAAATGCAGGAAATTCGCCA----ATTTGAAGATCA     77

BSNT_01344___     96 AGTGCATGAACTGTTCGCCC---AGGGAGTGCTT-CCCGGATTCGTTCAT    141
                     |||.||  .|||.||....|   |||||  .||| ||.|||||.||.|||
BPUM_0451___a     78 AGTACA--CACTCTTTTTACAAAAGGGA--TCTTGCCAGGATTTGTCCAT    123

BSNT_01344___    142 TTATATGCCGGTGAGGAAGCCGTGGCTGTAGGGGTGTGCGCTCATTTACA    191
                     .|.|||||.|||||.|||||.||.||||||||.||.|||||||||.|..|
BPUM_0451___a    124 CTTTATGCTGGTGAAGAAGCTGTTGCTGTAGGTGTCTGCGCTCATCTGAA    173

BSNT_01344___    192 TGATGGCGACAGCATTACAAGCACCCACAGGGGACATGGACATTGTATCG    241
                     |||....|||||.||||||||.||.||..|.||.||.||.||||||||||
BPUM_0451___a    174 TGAACAAGACAGTATTACAAGTACACATCGCGGCCACGGTCATTGTATCG    223

BSNT_01344___    242 CCAAAGGCTGTGATTTGGACGGCATGATGGCGGAAATTTTCGGGAAAGCG    291
                     |.||.|||||||||.|..|.||.||||||||.|||||.|..||.|||||.
BPUM_0451___a    224 CGAAGGGCTGTGATCTAAAAGGAATGATGGCAGAAATCTATGGAAAAGCC    273

BSNT_01344___    292 ACCGGATTGTGCAAAGGCAAGGGCGGTTCTATGCACATTGCGGATCTTGA    341
                     ||.||..|.||.|||||.||.||.||.||||||||||||||.|||.||||
BPUM_0451___a    274 ACAGGTCTTTGTAAAGGAAAAGGTGGATCTATGCACATTGCAGATTTTGA    323

BSNT_01344___    342 TAAAGGCATGTTAGGCGCAAATGGAATCGTCGGGGGCGGCTTTACGCTCG    391
                     ||||||.|||.||||.||.||.|||||.||.||.||.||||||.|.||.|
BPUM_0451___a    324 TAAAGGAATGCTAGGTGCCAACGGAATTGTTGGAGGTGGCTTTCCACTTG    373

BSNT_01344___    392 CATGCGGATCAGCGCTCACGGCTAAATATAAACAGACTAAAAATGTAAGC    441
                     |.|||||..||||.||.|||||||||||||||.||||.||.|||||||||
BPUM_0451___a    374 CGTGCGGGGCAGCCCTTACGGCTAAATATAAAAAGACAAATAATGTAAGC    423

BSNT_01344___    442 GTTTGCTTTTTCGGGGACGGGGCAAATAACCAAGGCACCTTCCACGAAGG    491
                     |||||||||||.||||||||.||.||.||.|||||.||.||.||||||||
BPUM_0451___a    424 GTTTGCTTTTTTGGGGACGGTGCTAACAATCAAGGGACTTTTCACGAAGG    473

BSNT_01344___    492 GCTGAATTTAGCGGCTGTATGGAACCTTCCTGTCGTGTTTGTTGCTGAAA    541
                     ..|.|||.|.|||||..|.|||||.||.||.|||.|.||..|.||.||||
BPUM_0451___a    474 AATCAATCTCGCGGCCATCTGGAAACTGCCAGTCATTTTCATCGCAGAAA    523

BSNT_01344___    542 ACAACGGCTATGGCGAAGCTACCCCATTTGAGTACGCATCAGCCTGTGAT    591
                     ||||.||.||.||.|||||.||.||||||...||.||.|||..|||..|.
BPUM_0451___a    524 ACAATGGGTACGGGGAAGCGACGCCATTTTCTTATGCTTCAAGCTGCAAA    573

BSNT_01344___    592 TCAATCGCCGATCGGGCAGCTGCTTATAACATGCCGGGGGTTACAGTTGA    641
                     |||||||..|||||.||.||.|.||||.||||.||.|||.||..|||.||
BPUM_0451___a    574 TCAATCGTAGATCGAGCGGCCGGTTATGACATTCCTGGGATTCAAGTAGA    623

BSNT_01344___    642 CGGCAAAGATATTTTAGCAGTTTACCAGGCAGCCGAGGAAGCGATAGAAA    691
                     .||.||||||.|..|.||.|||||.||.||.||.||..|||||||||||.
BPUM_0451___a    624 TGGAAAAGATGTGATGGCTGTTTATCAAGCCGCAGAACAAGCGATAGAAC    673

BSNT_01344___    692 GAGCAAGAAACGGCGGCGGCCCGTCTTTGATTGAATGTATGACCTACAGA    741
                     ||||||.|||.||.|..||.|||.|.|||||||||||.|||||.||..|.
BPUM_0451___a    674 GAGCAAAAAATGGGGAAGGTCCGACATTGATTGAATGCATGACATATCGG    723

BSNT_01344___    742 AACTACGGCCATTTCGAAGGAGATGCCCAAACCTATAAAACGAAGGATGA    791
                     ||.||.||.|||||.||||||||.||.||...|||.|||||.||..|.||
BPUM_0451___a    724 AATTATGGTCATTTTGAAGGAGACGCTCAGCGCTACAAAACCAATCAAGA    773

BSNT_01344___    792 AAGAGTTGAGCACCTTGAAGAAAAAGATGCCAT---TCAAGGTTTTAAAA    838
                     ||.|...||.||.|..|||||.|.||||||.||   ||   .||||||||
BPUM_0451___a    774 AAAAACCGAACATCAAGAAGAGAGAGATGCGATCGCTC---TTTTTAAAA    820

BSNT_01344___    839 ACTACCTTTTAA--AAGAAACAGATGCT----AAT---AAGCTGTCAGAC    879
                     |..|   .||||  |||.|.|||.||||    |||   .||||.|||.|.
BPUM_0451___a    821 ATGA---ATTAATCAAGCAGCAGCTGCTGACGAATGGAGAGCTATCAAAT    867

BSNT_01344___    880 ATTGAACAGCG--TGTCAGC-GAATCGATTGAAAAAGCCGTTTCGTTCAG    926
                     |||||  ||||  ||| ||| ||..||||.||..|||||||....|||||
BPUM_0451___a    868 ATTGA--AGCGGCTGT-AGCAGATGCGATAGATGAAGCCGTAAGATTCAG    914

BSNT_01344___    927 CGAAGACAGTCCATATCCAAAAGATTCGGAGCTGCTGACAGATGTGTACG    976
                     .|||||.|||..||||||..|..||.||||..|||||||.||||||||.|
BPUM_0451___a    915 TGAAGAAAGTGAATATCCCGATCATACGGAATTGCTGACTGATGTGTATG    964

BSNT_01344___    977 TGTCATATGAAAAAGGAGGAATGTAA   1002
                     |.||.|||.||.||            
BPUM_0451___a    965 TTTCGTATCAATAA------------    978


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