Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03916 and BPUM_0461

See Amino acid alignment / Visit BSNT_03916 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence dna-align/BSNT_03916___adhA.1.24716.seq
#    -bsequence dna-align/BPUM_0461___adhA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03916___adhA-BPUM_0461___adhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03916___adhA-BPUM_0461___adhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03916___adhA
# 2: BPUM_0461___adhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1072
# Identity:     763/1072 (71.2%)
# Similarity:   763/1072 (71.2%)
# Gaps:          44/1072 ( 4.1%)
# Score: 2552.5
# 
#
#=======================================

BSNT_03916___      1 ATGTGT---AATCAAC-ATCAAACCCGTGTATTAAGCGTGTCACATGCAA     46
                     ||||||   |..||.| |||||||    ||.|||||.||.||||||||||
BPUM_0461___a      1 ATGTGTCAGACGCACCAATCAAAC----GTTTTAAGTGTTTCACATGCAA     46

BSNT_03916___     47 AAGCCAAATTTGAACAAACGACGATTGAGCGAAGAG-GATTACGGCCGCA     95
                     ||||.||.|||||||..||.||.|||||.||||||| |.|| ||.||.||
BPUM_0461___a     47 AAGCGAATTTTGAACGGACAACCATTGAACGAAGAGCGCTT-CGTCCACA     95

BSNT_03916___     96 CGATGTCTTAATCGATATTAAATTCAGCGGTATTTGCCATTCAGACATTC    145
                     .|||.|.|||||.||||||.||||.|||||.||.||.||||||||.||.|
BPUM_0461___a     96 TGATATTTTAATTGATATTCAATTTAGCGGGATCTGTCATTCAGATATCC    145

BSNT_03916___    146 ATAGTGCTTTTGATGAATGGGGCGGTGGCATCTTCCCAATGGTGCCAGGA    195
                     |.||.||.|||||||||||||||||.||.||.|||||||||||.||.||.
BPUM_0461___a    146 ACAGCGCCTTTGATGAATGGGGCGGCGGTATTTTCCCAATGGTTCCGGGT    195

BSNT_03916___    196 CATGAAATAGCCGGTGTCGTAACAGCCGTTGGAGCAGAAGTCACCAAATT    245
                     |||||.||..|.||.||.||..|.||.||.||.|..||.||.||.||.||
BPUM_0461___a    196 CATGAGATTACTGGAGTTGTTTCGGCTGTCGGTGATGATGTGACGAAGTT    245

BSNT_03916___    246 TGCTG-TCGGGGACCGCGTTGGTGTCGGCTGTTTTGTTGACTCATGCGGA    294
                     | |.| |.||.|||||.||.||.||.||.||.|||||.||.||.|||||.
BPUM_0461___a    246 T-CAGATTGGAGACCGTGTAGGCGTTGGTTGCTTTGTGGATTCCTGCGGC    294

BSNT_03916___    295 GAATGCGAATACTGTCTAAACGGAGAGGAACAGTTCTGCACGAAGGGTGT    344
                     ...||.|||||.||.|.|||.|||||.||.||.|..||.|||||.||.||
BPUM_0461___a    295 ACCTGTGAATATTGCCAAAATGGAGACGAGCAATATTGTACGAAAGGAGT    344

BSNT_03916___    345 TGTTCAAACGTATAACTCAG--TAGACTACGACGGAAACCCCACTTATGG    392
                     .||.|||||.|||||  .||  |.||.||.|||||..|.||.||||||||
BPUM_0461___a    345 CGTCCAAACCTATAA--TAGCATTGATTATGACGGGGAACCAACTTATGG    392

BSNT_03916___    393 CGGGTACAGCCAAAAAATCGTTGTCACTGACAGA----TTTGTTGTTCGA    438
                     |||.||.||.||.||.||.||.|    |||||||    |||||.||..|.
BPUM_0461___a    393 CGGCTATAGTCAGAAGATTGTCG----TGACAGAGCGTTTTGTCGTCAGC    438

BSNT_03916___    439 ATCCCAGATCGTTTGGAAA-------TGGATGTTGCCAGTCCGCTGTTGT    481
                     ||.|||||||       ||       |.||||..||.|||||.||..|.|
BPUM_0461___a    439 ATTCCAGATC-------AACTATCCCTTGATGCCGCAAGTCCTCTCCTCT    481

BSNT_03916___    482 GTGCAGGTATCACAACATATTCTCCGCTGAAACACTGGAATGTTGGCCCG    531
                     |.||.||.||.||.||.||||||||..|.||.||||||||.|..||||||
BPUM_0461___a    482 GCGCTGGCATTACCACTTATTCTCCATTAAAGCACTGGAAGGCAGGCCCG    531

BSNT_03916___    532 GGTAAAAAAGTTGCGATTGTAGGCGTGGGTGGCCTTGGACATTTGGCGAT    581
                     |||||||||||.||.||.||.||..|||||||.||.||.|||.|.||.||
BPUM_0461___a    532 GGTAAAAAAGTCGCCATCGTCGGGATGGGTGGGCTCGGTCATGTAGCCAT    581

BSNT_03916___    582 TCAATTTGCACATGCGATGGGTGCAGAGGTAACCGTCCTGAGCCGTTCCA    631
                     ||||||.||||.|||..|.||.||.||.||.||.||..|.|||||.||.|
BPUM_0461___a    582 TCAATTCGCACGTGCACTTGGCGCTGAAGTCACGGTATTAAGCCGCTCGA    631

BSNT_03916___    632 TGAATAAGAAAGAGGAAGCTCTGGAACTCGGTGCAAATCATTACTTTGCA    681
                     |||||||.|||||.||.||.|||..|.|.||||||||..|.||.|||||.
BPUM_0461___a    632 TGAATAAAAAAGAAGAGGCACTGTCATTTGGTGCAAAAAACTATTTTGCT    681

BSNT_03916___    682 ACAAGTGACCCAGCCACATTCACTGCATTGGCCGGGCGTTTTGACGTGAT    731
                     ||||||||.||.|..|||||.|...||||.|||||.|..|..|||.|.||
BPUM_0461___a    682 ACAAGTGATCCCGATACATTTAAAACATTAGCCGGTCAATACGACCTCAT    731

BSNT_03916___    732 CTTAAATACGGTATCGGCAAATCTCGATGTAGATGCCTATTTATCAATGC    781
                     ..|.|||||.||.||.||.|||.||.|||||||.||||||||.||..|.|
BPUM_0461___a    732 TCTCAATACAGTCTCTGCCAATATCAATGTAGACGCCTATTTGTCCTTAC    781

BSNT_03916___    782 TTCGTATAGACGGGACACTT-GTAAACGTTGGAGCTCCTGCC-AAGCCGG    829
                     ||||..|.||.||.|| ||| ||.||.||.||.||.|| ||| ||.||.|
BPUM_0461___a    782 TTCGCGTGGATGGAAC-CTTAGTGAATGTCGGTGCACC-GCCTAATCCAG    829

BSNT_03916___    830 A-CACATACAGTGTGTTTTCCCTAATCATGGGGCGCCGCAGCATTGCAGG    878
                     | || ||.|...||.|||||..||||....||.|||||||||||||||||
BPUM_0461___a    830 ATCA-ATTCCACGTCTTTTCATTAATTTCCGGCCGCCGCAGCATTGCAGG    878

BSNT_03916___    879 TTCTCTAGTCGGCGGAATTCAAGAAACTCAAGAGATGCTGGATTTCGCAG    928
                     |||.||.||.|||||.||.||||||||.|||||.|||||.||||||||||
BPUM_0461___a    879 TTCACTCGTTGGCGGCATCCAAGAAACACAAGAAATGCTCGATTTCGCAG    928

BSNT_03916___    929 CTGAGCATGGCATCGAACCTAAAATCGAAGTCATCGGAGCTGACCAAGTG    978
                     |||..||....||||.|||..||||.|||||.|||...||..|.|||.|.
BPUM_0461___a    929 CTGCTCACAAGATCGCACCACAAATTGAAGTAATCAACGCAAATCAAATT    978

BSNT_03916___    979 GACGAAGCATACGAACGTATCCTCCGAAGCGATGTCCGCTATCGATTTGT   1028
                     ||.|||||.||.||||||.|.||...|||.|||||.|..|||||.|||||
BPUM_0461___a    979 GATGAAGCGTATGAACGTGTGCTGAAAAGTGATGTGCTTTATCGGTTTGT   1028

BSNT_03916___   1029 GATTGATATTTCCACATTGTAA   1050
                     |||||||||.||.|||||.|.|
BPUM_0461___a   1029 GATTGATATCTCAACATTATGA   1050


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