Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03914 and BPUM_0462
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03914___yraB.1.24716.seq
# -bsequence dna-align/BPUM_0462___yraB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03914___yraB-BPUM_0462___yraB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03914___yraB-BPUM_0462___yraB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03914___yraB
# 2: BPUM_0462___yraB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 466
# Identity: 260/466 (55.8%)
# Similarity: 260/466 (55.8%)
# Gaps: 107/466 (23.0%)
# Score: 695.5
#
#
#=======================================
BSNT_03914___ 1 ATGAATATTGCTCAGGTGGCAAAGCAG-----TTTGGC--CTGACAGCCG 43
|||||.||.||.||.|..||.|||||| |||..| || |
BPUM_0462___y 1 ATGAAAATAGCACAAGCCGCCAAGCAGCTCGATTTATCTACT-------G 43
BSNT_03914___ 44 CAACACTCCGATATTACGAACGTGTAGGATTA---------ATCCCGCCT 84
|.||.|||.||||.|||||...|.|.||.||| ||||..|.|
BPUM_0462___y 44 CTACGCTCAGATACTACGAGAATATTGGGTTAATTCGACCGATCCGTCGT 93
BSNT_03914___ 85 GTAAAACGAAAAAACAGCGGCATTCGCGACTATGATGAAGAAGATATCAA 134
| |.||||| |||..||||.||.||||..|||||.|||||..|
BPUM_0462___y 94 G----ATGAAAA-----CGGTGTTCGTGATTATGCAGAAGAGGATATTCA 134
BSNT_03914___ 135 ATGGATTGAATTCATTAAATGCATGCGAAATGCGGGACTATCGATAGAAG 184
.|||||||||||.||.|||||.|||.||||||||||.||.||.||.||.|
BPUM_0462___y 135 GTGGATTGAATTTATCAAATGTATGAGAAATGCGGGTCTCTCAATTGATG 184
BSNT_03914___ 185 CGCTAATTGAATATACAACATTATTTACCGAAGGTGA----------CCG 224
|.||....||||||||..|.|||||||.|||.||.|| |.|
BPUM_0462___y 185 CACTTCGAGAATATACGGCTTTATTTATCGAGGGCGAGGATCATACCCTG 234
BSNT_03914___ 225 TACAGTAGAAGCTCGAAAAAATATCCTGGCTGACGAACGACAGCGGCTGA 274
|.| .|.||.||||.|||..|||...|.||..||.|..|.||..
BPUM_0462___y 235 TCC-------TCACGGAAAAGTATTTTGGTCAATGAGAGAGAAAGACTTG 277
BSNT_03914___ 275 TAGAGAAGCGGAAAGAAATTGATGAAACAATTAAAAGATTAGA-CACAAA 323
||||.||||..||.|||||.||.||.||.|||||..||||||| .||||.
BPUM_0462___y 278 TAGAAAAGCAAAAGGAAATCGAAGAGACGATTAAGCGATTAGATTACAAG 327
BSNT_03914___ 324 AATTAAAGATTATGATGGGAAATTGCGC--------GAAAACGAGGCAAA 365
|...|||| |||||| .||.|||...| ||| ||||
BPUM_0462___y 328 ATAGAAAG-TTATGA--AGATATTATCCACAGTTATGAA-------CAAA 367
BSNT_03914___ 366 A--------CTCAAAAGCAGGCCTAAAACGGAAAGTCTTCACGGATCAGT 407
| .|||| ||||||...|| ||| ||.|
BPUM_0462___y 368 AGCTCGTTCATCAA--------CTAAAAACCAA----TTC------CATT 399
BSNT_03914___ 408 GGAGCAAAGAAGGTAG 423
.||
BPUM_0462___y 400 TGA------------- 402
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