Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00887 and BPUM_0500

See Amino acid alignment / Visit BSNT_00887 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:37
# Commandline: needle
#    -asequence dna-align/BSNT_00887.1.24716.seq
#    -bsequence dna-align/BPUM_0500.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00887-BPUM_0500.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00887-BPUM_0500.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00887
# 2: BPUM_0500
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 978
# Identity:     560/978 (57.3%)
# Similarity:   560/978 (57.3%)
# Gaps:         216/978 (22.1%)
# Score: 1411.0
# 
#
#=======================================

BSNT_00887         1 ----ATGAAAAATACCCTGT-TAGGTTCTATATATTTAGCTTTAGCCGCT     45
                         ||||||||||     | ||||..|..|.||..||||..|.||.||.
BPUM_0500          1 ATGAATGAAAAATA-----TATAGGCGCCCTTTACCTAGCAATCGCAGCA     45

BSNT_00887        46 AGTATCTGGGGTGGCATGTATGTTGTGGTTAAGGTTGTTGTCGCAGTAAT     95
                     |||||.|||||.||.|||||||||||.||.||.||....||.||.||..|
BPUM_0500         46 AGTATTTGGGGCGGTATGTATGTTGTTGTCAAAGTCACAGTAGCGGTTGT     95

BSNT_00887        96 TCCGCCTTTTGAATTGGTTTGGATCAGGTATGTCATCGC---CATCCTTG    142
                     .|||||..||||..|.||.|||||.||.||||..||.||   .|||.||.
BPUM_0500         96 CCCGCCACTTGAGCTCGTCTGGATGAGATATGCTATAGCAGGAATCGTTT    145

BSNT_00887       143 CGCTTCTTA----TTG----TTGG--------------TTTGATAAGGAA    170
                     .|.|..|||    |||    ||||              ||.|||||  ||
BPUM_0500        146 TGGTGTTTACCATTTGGCGCTTGGGCTATTCCTTTCAATTAGATAA--AA    193

BSNT_00887       171 ACAATCTTGGAAAATTCATAAGCGCGACCTTTTATTAATTGTTGCCATTG    220
                     |..||        ||.|     |||      ||||  ..|||||  ||||
BPUM_0500        194 AAGAT--------ATCC-----CGC------TTAT--GGTGTTG--ATTG    220

BSNT_00887       221 GAATTGTTGGCAACACCATTTCAATTGTTACACAAGAATATGGAACGATG    270
                     |..|..|.||.||...|.|||||||.||.||.||||||..|||.||||||
BPUM_0500        221 GGCTGATCGGAAATTTCCTTTCAATCGTGACTCAAGAAATTGGGACGATG    270

BSNT_00887       271 TTGTCTTCAGCACAAATGGGAGCAATTATTACGTCCTCCACACCAGCGTT    320
                     |...|.||.|||||||||||.||..|||||||.||..|.||.||.|||||
BPUM_0500        271 TATACCTCTGCACAAATGGGGGCTGTTATTACATCTGCAACTCCTGCGTT    320

BSNT_00887       321 CATGGTTATTTTTGCT---CGTCTATTACTTAAAGAA-CCATTGAATATA    366
                     .|||||..|.||||||   ..|||||||   |||||| ||| |||.|.|.
BPUM_0500        321 TATGGTGCTGTTTGCTTTCTTTCTATTA---AAAGAAGCCA-TGACTGTT    366

BSNT_00887       367 AAAAAAGGAACTTCAATAATTTTAGCGACCACAGGCGTATTATTTATTGT    416
                     ..|||..|..|.||.||..|..|.|||||..||||.||||...|.||..|
BPUM_0500        367 CGAAAGTGCGCATCCATCCTGCTTGCGACAGCAGGTGTATGGCTCATGAT    416

BSNT_00887       417 TGGA----------AACGGACATATTGATACCTCTAATCAGCTTGGCGGT    456
                     ||||          .||.||||.||..||             |||.||||
BPUM_0500        417 TGGACCAGTTGCAGTACAGACAGATGAAT-------------TTGTCGGT    453

BSNT_00887       457 --------AT-----TTCTCTGCTTGTTGCAGCCCTTACATGGGCACTGA    493
                             ||     |||.||||||          |.||||||||.||||
BPUM_0500        454 GGTCTTTCATTGGTCTTCGCTGCTT----------TAACATGGGCGCTGA    493

BSNT_00887       494 TGTCAGTGCTTATCAAACGCGTGCCA--AACAGCTATTCGCCTATACT--    539
                     ||||.||..|..|||||||.||.|||  || ||         ||..||  
BPUM_0500        494 TGTCTGTTTTGCTCAAACGTGTTCCAGGAA-AG---------TACCCTCA    533

BSNT_00887       540 --TGTT----ACCACGTATTCAACTTTTGTGGCCATTGTGGCACTAACTC    583
                       ||.|    |||||.|||.|.|.|.|      ||||   |||.|.|   
BPUM_0500        534 GGTGGTGACAACCACATATGCGATTAT------CATT---GCATTTA---    571

BSNT_00887       584 CTT-TTGTAAAAC--CTAGCACGATT---TTTACGCCACTACTGCTTGA-    626
                      || ||.|||.||  |.||.|..|||   |||||..|||     ||.|| 
BPUM_0500        572 -TTGTTTTAACACCGCCAGTATTATTTCGTTTACCTCAC-----CTAGAT    615

BSNT_00887       627 -----------------CCCTAAAATTCTAGGTGGTCTTTTGTATTTGGG    659
                                      .||..|.|||...||||||.||.|.|||.|.||
BPUM_0500        616 GTGGAACAGATGGCAAGGCCGGAGATTTGGGGTGGTATTCTTTATCTAGG    665

BSNT_00887       660 AATTGTTTCAACCGCTTGTGCTTTTTTATTGTGGAACCG-CGGCTTACAA    708
                     .||..|.|||||.|||...||.||.||.||.|||||.|| .||||| |||
BPUM_0500        666 TATCATCTCAACAGCTCTAGCATTCTTTTTATGGAATCGAGGGCTT-CAA    714

BSNT_00887       709 TTATTAAATGCCTCAAGTGGAGGCCTCTTTTTCTTTTTTCAGCCTCTGGT    758
                     |||.|..||||||||||.||.||.||.||.||.||.|||||.||..|.||
BPUM_0500        715 TTAATGGATGCCTCAAGCGGTGGGCTGTTCTTTTTCTTTCAACCGATCGT    764

BSNT_00887       759 TGGAACCTTACTCGGATGGATTCTGCTT---GGAGAACAAATAGGCGGGA    805
                     .||..||.|.||.||.|||   ||||||   ||||||.||||    ||||
BPUM_0500        765 AGGTGCCATTCTTGGCTGG---CTGCTTTTGGGAGAAGAAAT----GGGA    807

BSNT_00887       806 -------CATT--TTGG-ATAGGTTCGTTTTTAATTCTTAGC-GGTGT-T    843
                            ||||  |||| |    ||| |.|.||  ||||.|| ||||| |
BPUM_0500        808 TTACGCTCATTCATTGGCA----TTC-TATGTA--TCTTCGCAGGTGTCT    850

BSNT_00887       844 TTA------TTAGTCATTAAA-GAGTAA    864
                     .||      |..||||  ||| ||.|||
BPUM_0500        851 ATACTGTGCTGCGTCA--AAAGGAATAA    876


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