Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01253 and BPUM_0510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_01253___yfmS.1.24716.seq
# -bsequence dna-align/BPUM_0510.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01253___yfmS-BPUM_0510.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01253___yfmS-BPUM_0510.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01253___yfmS
# 2: BPUM_0510
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1063
# Identity: 482/1063 (45.3%)
# Similarity: 482/1063 (45.3%)
# Gaps: 434/1063 (40.8%)
# Score: 958.0
#
#
#=======================================
BSNT_01253___ 1 ATGGAA-----TTGACCATAAATACG--GAAAAAGAAACCGCAGATATTC 43
|.||| |||||.|| ||.| ||||
BPUM_0510 1 -TTGAATAGGCTTGACTAT---TATGTTGAAA------------------ 28
BSNT_01253___ 44 TGGACGCATTTATCAAAGTAGCCCCTTATTTA-AACAGCCTGGTTCAGGA 92
||| .|||| |||.||| ||.| ||||..||
BPUM_0510 29 TGG--------CTCAA---------TTAGTTAGAAAA-----GTTCTAGA 56
BSNT_01253___ 93 TGA---TATTACAATCGGCATTTATGATACGGAAAAACTGCTCGTG--AA 137
||| ||||....|||||||...||||||.|||||..|||| .|| |.
BPUM_0510 57 TGAAAGTATTCTTTTCGGCATCACTGATACAGAAAAGGTGCT-TTGCTAC 105
BSNT_01253___ 138 TATACCGGC-----CAAAACCTTTTCGC-TGAACGTAAAAGCCGGCGATC 181
||| |||.| |||.|..||||.|| ||||.|| .||.||.|
BPUM_0510 106 TAT-CCGTCTAACACAATAGATTTTGGCATGAAGGT------TGGGGACC 148
BSNT_01253___ 182 CGCTG----CAGGAA-----------GGGGATATCATCACAGATGCCATC 216
|..|| || ||| ||.||...|||.| |||.|.||
BPUM_0510 149 CATTGAACCCA-GAAGACCAAAACGTGGCGACGACATTA-AGAGGACA-- 194
BSNT_01253___ 217 CGAAGCAATCAGAAGAAGACGAGC------------------ATGGTTCC 248
||||.|.||||..| ||||||..
BPUM_0510 195 ----------AGAATATGACGGTCATTTACCAGAGTCTTTATATGGTTAT 234
BSNT_01253___ 249 GAAAGAATTGTTCGGCTTCCCATTGATCGCGCGTGCCAT-CCCGCTGCAC 297
|| ||||| ||.|.|..| || | ||||.|...|
BPUM_0510 235 GA---AATTG----------CAGTAAAAG---GT----TACCCGATTTTC 264
BSNT_01253___ 298 GACGAGAATGGAAGAGTCATTGGAGGCGTCGGCCTCGGAACGAGCCTT-- 345
||.||.|||.|||.|||.||||| || |||
BPUM_0510 265 GATGAAAATAGAAAAGTAATTGG----------CT----------CTTTT 294
BSNT_01253___ 346 ---GAGGAGTCGTCAAAGCTGCATGATGTCGCGGAA-------------- 378
|.||..|..||| |||.| |||.|.||
BPUM_0510 295 TTAGTGGCATTTTCA------CATCA--TCGTGAAAAGAAATTAAGCGGT 336
BSNT_01253___ 379 -------AGCTTATCA--GCTGTCG---------------------TTGA 398
|||.||||| |.|||.| ||||
BPUM_0510 337 TATATGGAGCATATCAATGGTGTAGCAAAAGAACTCCAAAGTGGAATTGA 386
BSNT_01253___ 399 ACAAACAGCCGCG-----------GCTATTTCCGACA--TTTCTGAATCA 435
.||||..||.||| ||||..|.|.||| |||...|||.|
BPUM_0510 387 GCAAATTGCTGCGCATTCACAAGAGCTAGCTGCCACAAGTTTAGAAATAA 436
BSNT_01253___ 436 ATTAACGGGTTTTCAACTCAAATGTCGGGCATTTCCTCTCAGGCGAAAAA 485
.|.|||.|| |||| |
BPUM_0510 437 GTGAACAGG------------------------------CAGG------A 450
BSNT_01253___ 486 AGTAAGCGAAAGCGCCGGTGAAATC-GCCGATATTTCAGTAACT-GTTAA 533
|| ||||.|| |.|||||| ||..|.|||..|| ||.| ||.||
BPUM_0510 451 AG--AGCGGAA------GAGAAATCAGCAAACATTGAAG-AAGTCGTCAA 491
BSNT_01253___ 534 A---------GGCATCTCT-GACCAAAGCAATCTGCTCGGCTTGAATGCC 573
| ||.||..|| || ||||.|||..||||.|||.|.|||||.
BPUM_0510 492 AACCATTGGCGGTATTGCTAGA-CAAACCAACTTGCTAGGCCTAAATGCT 540
BSNT_01253___ 574 GCGATCGAAGCGGCAAGAGCAGGGGAGTCCGGAAAAGGGTTCTCTGTCGT 623
||.||.|||||.|||||.|||||.|||...|||||||||||..|||||||
BPUM_0510 541 GCAATTGAAGCAGCAAGGGCAGGAGAGAATGGAAAAGGGTTTGCTGTCGT 590
BSNT_01253___ 624 CGCAGATGA-----------GATCAG-------AAAGCTAGCGACGCATT 655
.||.||||| .||||| ||||..||||.||
BPUM_0510 591 GGCTGATGAAGTTCGTAAATTATCAGATGGCTCAAAGGAAGCGGCG---- 636
BSNT_01253___ 656 CAAAAGAAAATGTCGGCCA--AATTGACCAGATTACGAAAAAAATCC--- 700
|||| ||| ||| |||...||| |||.|.||||
BPUM_0510 637 -----GAAA-------CCATTAAT--ACCTTCTTA--AAAGAGATCCAAG 670
BSNT_01253___ 701 ACAGCCTGCTGAAAGGGCTGGAGGAATCCATTGAGTC-----------GA 739
|||||.| ||| |.|||| ||| .|
BPUM_0510 671 ACAGCAT-----------TGG-----TACATT--GTCTGAAAATATCTCA 702
BSNT_01253___ 740 TTAACCAGCA----TACAGACGGACAAGCCGCTGCCGTTGAACAAATTTC 785
..||.||||| .|||.|.|.||||||| .|||||.|..|
BPUM_0510 703 CAAATCAGCAGCTCAACAAATGAACAAGCC---------AAACAAGTGAC 743
BSNT_01253___ 786 CGCCACGATGCAGGAGATTTCAGGAAGCGCGCA------GCATC-TTGCA 828
||||||.|.||| | |.||| ||
BPUM_0510 744 --------------AGATTTTACGAA------AATTATCGAATCATT--- 770
BSNT_01253___ 829 AAAATG-GCTGAAA-AAGCG------------CTTGAGGAAGAGTAA--- 861
||||| |.|.||| |||.| .||||.| |||.||.
BPUM_0510 771 -AAATGAGTTTAAAGAAGAGATGAATCATTTTATTGAAG-AGATTAGACA 818
BSNT_01253___ 861 ------------- 861
BPUM_0510 819 GGATACAAAATAG 831
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