Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00032 and BPUM_0512

See Amino acid alignment / Visit BSNT_00032 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:58
# Commandline: needle
#    -asequence dna-align/BSNT_00032___dgk.1.24716.seq
#    -bsequence dna-align/BPUM_0512___dgk.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00032___dgk-BPUM_0512___dgk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00032___dgk-BPUM_0512___dgk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00032___dgk
# 2: BPUM_0512___dgk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity:     429/677 (63.4%)
# Similarity:   429/677 (63.4%)
# Gaps:         106/677 (15.7%)
# Score: 1305.5
# 
#
#=======================================

BSNT_00032___      1 ATGAATACAGCCCCTTTTATTGCAATAGAAGGTCCTATCGGGGCAGGAAA     50
                     |||.||.|.|||||||||||||||.|.|||||.||.||.||.||.|||||
BPUM_0512___d      1 ATGTATCCTGCCCCTTTTATTGCAGTGGAAGGCCCAATTGGAGCCGGAAA     50

BSNT_00032___     51 AACAACTCTCGCAACGATGCTCTCACAAGAATTCGGATTCCCTATGATCA    100
                     |||||||.|.||.||.|||||..|..|.|||||...|||.|||.|..|.|
BPUM_0512___d     51 AACAACTTTGGCTACAATGCTTGCGAAGGAATTTCAATTTCCTTTAGTAA    100

BSNT_00032___    101 ATGAGATTGTAGAGGATAACCCGTACCTTGATAAGTTTTATGACAATATA    150
                     |.|||||||||||.||.||.||.|.|.|.|||||.||||||||..||||.
BPUM_0512___d    101 AAGAGATTGTAGAAGAAAATCCATTCTTAGATAAATTTTATGAAGATATG    150

BSNT_00032___    151 GAGGAATGGAGCTTCCAGCTCGAGATGTTTTTTCTTTGTCACAGATACAA    200
                     ||..||||||||||.|||||.||||||||.|||.|.||..|..|.|.|||
BPUM_0512___d    151 GAACAATGGAGCTTTCAGCTTGAGATGTTCTTTTTATGCAATCGGTTCAA    200

BSNT_00032___    201 ACAGCTTGAA--GACACCAGTGATCACTTTTTAAAA--AAGGGA------    240
                     ||||.|.|||  ||..|.||            ||||  |.|.||      
BPUM_0512___d    201 ACAGTTAGAATCGATTCAAG------------AAAACTATGTGAATCATC    238

BSNT_00032___    241 --CAGCC---TGTAATAGCTGATTATCATATTTATAAAAATGTGATTTTT    285
                       |||||   |||.|   |||||||||||.|.|||||||||.||||.|||
BPUM_0512___d    239 AGCAGCCGATTGTCA---CTGATTATCATGTATATAAAAATATGATATTT    285

BSNT_00032___    286 GCGGAACGCACCTTGTCTCCACATCAGCTGGAAAAATACAAAAAGATATA    335
                     ||.|||.|.||.||.||...|.|.||..||||.|||||||.||||||.||
BPUM_0512___d    286 GCAGAAAGAACATTATCGAAAAAGCACATGGACAAATACAGAAAGATCTA    335

BSNT_00032___    336 TCACCTGCTAACGGATGATCTGCCAAAGCCGAATTTCATCATTTACATAA    385
                     ||||.|||||||.||||||||.||.||.||.|||..||||||.||.||||
BPUM_0512___d    336 TCACTTGCTAACAGATGATCTTCCTAAACCCAATGCCATCATCTATATAA    385

BSNT_00032___    386 AGGCCAGTCTGCCTACATTGCTACACCGCATTGAAAAA---------CGC    426
                     |.|||||.||.|||||.||.|         ||||||.|         .|.
BPUM_0512___d    386 AAGCCAGCCTTCCTACCTTAC---------TTGAAAGAATACAGATGAGA    426

BSNT_00032___    427 GGGCGCCCCTTTGAGAAAAAAATTGAAACTAGC-TATTT-GGAGCAGCTG    474
                     ||.|||.|.|||||..||.|.|||| |.|.||| ||||| ..|.|| ||.
BPUM_0512___d    427 GGACGCTCTTTTGAAGAAGACATTG-ACCCAGCTTATTTAAAAACA-CTC    474

BSNT_00032___    475 ATTTCAGATTATGAAGTCGCCATCAAGCAGCTGCAGGAAGCAGACCCTGA    524
                     |||..|||||||||..|.|||||..|.||..|    .||.||||  ||||
BPUM_0512___d    475 ATTGAAGATTATGAGCTGGCCATTGAACATTT----AAAACAGA--CTGA    518

BSNT_00032___    525 AC---------------TTACAGTGTTAACCGTAGATGGTGATTCAAAGG    559
                     .|               |||||.| |.||  |.|||   |.||.||   |
BPUM_0512___d    519 CCCAGGGCTTCCTATCATTACAAT-TGAA--GGAGA---TCATACA---G    559

BSNT_00032___    560 ATTTCGTTT----------TGAATAAGAGCGACTTTGAACGCATTG--CC    597
                     |.|||||||          .||.||..|||.|          ||||  |.
BPUM_0512___d    560 ACTTCGTTTCCTCACAGCAAGATTACCAGCAA----------ATTGTACA    599

BSNT_00032___    598 GCCCATGTAAAGGAGCTTATCGTATGA    624
                     |..||  |||||||||...|..|||||
BPUM_0512___d    600 GAACA--TAAAGGAGCAAGTGCTATGA    624


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