Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00043 and BPUM_0520

See Amino acid alignment / Visit BSNT_00043 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:59
# Commandline: needle
#    -asequence dna-align/BSNT_00043___bofA.1.24716.seq
#    -bsequence dna-align/BPUM_0520___bofA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00043___bofA-BPUM_0520___bofA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00043___bofA-BPUM_0520___bofA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00043___bofA
# 2: BPUM_0520___bofA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 279
# Identity:     183/279 (65.6%)
# Similarity:   183/279 (65.6%)
# Gaps:          30/279 (10.8%)
# Score: 541.0
# 
#
#=======================================

BSNT_00043___      1 ATGGAGCCTATTTTTATTATTGGGATTATTTTAGGATTGGT-TATTCTTC     49
                     |||||.|||.||.||.|.||.|||...|||||  |.|.|.| ||.|.||.
BPUM_0520___b      1 ATGGAACCTGTTATTGTGATCGGGTCAATTTT--GCTAGCTGTACTATTG     48

BSNT_00043___     50 TT-TTTTTATCAG--GTTCAGCTGCGAAGCCTTTAAAGTGG---------     87
                     || |||.|.||||  |||||  .|||||.||.||.||||||         
BPUM_0520___b     49 TTGTTTATGTCAGGTGTTCA--AGCGAACCCCTTCAAGTGGTTAGGGCTA     96

BSNT_00043___     88 ATTGGCATCACAGCTGTTAAA-TTTGTGGCAGGTGCTTTGCTGCTGGTTT    136
                     |||||.|          |||| |||||||||||||||.|..|..|..|||
BPUM_0520___b     97 ATTGGAA----------TAAAGTTTGTGGCAGGTGCTCTTTTTTTATTTT    136

BSNT_00043___    137 GTGTAAATATGTTTGGCGGCAGTCTTGGCATT-CATGTGCCGATTAATCT    185
                     ||.|.|||.|.|||||.|..|||||.|| ||| |||||..|.|||||.|.
BPUM_0520___b    137 GTCTTAATCTATTTGGAGAGAGTCTAGG-ATTACATGTATCTATTAACCC    185

BSNT_00043___    186 GGTTACAACAGCTATCAGCGGAATTTTAGGGATACCCGGAATAGCTGCGT    235
                     .||.||||..|..|||||.||..|.||.||.||.||.||..||||.||.|
BPUM_0520___b    186 TGTAACAAGTGGCATCAGTGGTTTATTGGGCATTCCAGGCGTAGCAGCTT    235

BSNT_00043___    236 TAGTCGTTATTAAGCAATTTATCATTTAA    264
                     ||||.||.|||.|..|||||||.||||||
BPUM_0520___b    236 TAGTTGTAATTGAAAAATTTATTATTTAA    264


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