Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01032 and BPUM_0523

See Amino acid alignment / Visit BSNT_01032 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:40
# Commandline: needle
#    -asequence dna-align/BSNT_01032___ydiC.1.24716.seq
#    -bsequence dna-align/BPUM_0523___ydiC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01032___ydiC-BPUM_0523___ydiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01032___ydiC-BPUM_0523___ydiC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01032___ydiC
# 2: BPUM_0523___ydiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 765
# Identity:     467/765 (61.0%)
# Similarity:   467/765 (61.0%)
# Gaps:         150/765 (19.6%)
# Score: 1392.5
# 
#
#=======================================

BSNT_01032___      1 ATGACAATATTAGCAATTGATACATCAAATTATACATTGGGCATTGCGCT     50
                     .||||.|||.|.|||||||||||.|||||..|||||.|.||.|||||.||
BPUM_0523___y      1 TTGACCATACTGGCAATTGATACGTCAAACCATACACTAGGAATTGCCCT     50

BSNT_01032___     51 -------GCTTCGAGAAGACACTGTTATAGCAGAATACATTACATATTTG     93
                            |.|||       ||..||.||.|..|||...|||||.|||||.
BPUM_0523___y     51 TGTCAAAGATTC-------CATAGTGATTGGTGAAAGTATTACGTATTTA     93

BSNT_01032___     94 AAAAAGAACCACTCTGTAAGAGCGATGCCTGCTGTTCATTCATTGCTGAA    143
                     |||||||||||.||.||..||||||||||..|||||.|..|||||.||||
BPUM_0523___y     94 AAAAAGAACCATTCCGTCCGAGCGATGCCGACTGTTGAGGCATTGATGAA    143

BSNT_01032___    144 TGATTGTGATATGGCACCGCAG-GACCTTTCTAAAATTGTCGTTGCAAAA    192
                     .||.||||.|.|.||.|| .|| ||.||...|||||||||.||.||||||
BPUM_0523___y    144 AGAATGTGGTGTAGCGCC-AAGTGAACTAAGTAAAATTGTTGTAGCAAAA    192

BSNT_01032___    193 GGCCCAGGTTCATACACAGGAGTAAGAATAGGTGTGACGTTGGCCAAAAC    242
                     ||.||.|||||.|||||.||.||..||||.||||||||..|.||.|||||
BPUM_0523___y    193 GGACCTGGTTCCTACACTGGCGTTCGAATCGGTGTGACCATTGCAAAAAC    242

BSNT_01032___    243 ACTTGCCTG------GTCTTTAGACATTCCAATAAGTGCTGTATCAAGTC    286
                     |||.||.||      ||||      ||.||.|||...|||||.||.|||.
BPUM_0523___y    243 ACTCGCATGGACGCTGTCT------ATCCCGATATCGGCTGTTTCGAGTT    286

BSNT_01032___    287 TTGAGACGCTTGCGGCAAATGGCCGGCATTTTGACGGTCTGATCAGCCCA    336
                     |.||.||.||||||||||||||.|...|.|||||.||...||||...|||
BPUM_0523___y    287 TGGAAACACTTGCGGCAAATGGTCAATACTTTGATGGATGGATCTCACCA    336

BSNT_01032___    337 ATCTTTGATGCTAGACGGGGACAGGTGTACACAGG------TCTGTATCA    380
                     .|.||||||||.|||.|.|||||.||.||.||.||      |.|||.|.|
BPUM_0523___y    337 CTATTTGATGCGAGAAGAGGACAAGTTTATACTGGGCTATATATGTTTGA    386

BSNT_01032___    381 ATAT--AAAAAT----GGGCTTTTAGAGCAAGTTGTTCCAGATCAAAATG    424
                     |.||  ||||||    |       |||.|||     .|.|||.||||||.
BPUM_0523___y    387 AGATGGAAAAATCCAAG-------AGATCAA-----ACAAGACCAAAATA    424

BSNT_01032___    425 TGATGCTGGCAGATTGGCT---GGAGATGCTAAAAGA----AAAGGGGCG    467
                     |..||||..|.||||||||   .|||.|| .||||||    ||||     
BPUM_0523___y    425 TCTTGCTCACGGATTGGCTTCATGAGCTG-AAAAAGACAGGAAAG-----    468

BSNT_01032___    468 TCCTGTTTTGTTTTTAGGTCACGACACTTCTATTCACAAGCAGATGATAA    517
                      |||||..|.|||.|.||                              |.
BPUM_0523___y    469 -CCTGTCCTATTTCTTGG------------------------------AC    487

BSNT_01032___    518 AGGATGT---TCTT--AGAACAAAAGGATT-----CATT------GGAAC    551
                     |||||||   ||||  .||| .|.||.|||     ||||      |.|||
BPUM_0523___y    488 AGGATGTGCATCTTCATGAA-GAGAGCATTCGCTCCATTTTAGGAGAAAC    536

BSNT_01032___    552 TGCTG----CCCAG-----------CATAACCCGCGTCCTTCAGAA---T    583
                     .||||    |.|||           ||||||||..|.|||||  ||   |
BPUM_0523___y    537 GGCTGTGATCGCAGAGGGAGCTTTTCATAACCCAAGACCTTC--AATGCT    584

BSNT_01032___    584 TGGCTTTTCTCGGGA-AGGAAAAGGAA-------GCAGCTGATGTTCATG    625
                     ||.||||| |.|||| ||        |       ||||..|||||.|||.
BPUM_0523___y    585 TGCCTTTT-TAGGGACAG--------ATCGTCCTGCAGAGGATGTCCATC    625

BSNT_01032___    626 GGCTTGTCCCGGATTACTTGCGGCTGGCAGAAGCTGAAGCGAAATGGATT    675
                     .||||||.||..|.||..|.||..||||||||||.||||.|||||||.||
BPUM_0523___y    626 AGCTTGTACCTAACTATATTCGTATGGCAGAAGCGGAAGTGAAATGGCTT    675

BSNT_01032___    676 GAAAGTCAAAAGTAG    690
                     |||.|.|||||.||.
BPUM_0523___y    676 GAAGGACAAAAATAA    690


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