Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01040 and BPUM_0528
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:41
# Commandline: needle
# -asequence dna-align/BSNT_01040___rex.1.24716.seq
# -bsequence dna-align/BPUM_0528___rex.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01040___rex-BPUM_0528___rex.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01040___rex-BPUM_0528___rex.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01040___rex
# 2: BPUM_0528___rex
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 664
# Identity: 516/664 (77.7%)
# Similarity: 516/664 (77.7%)
# Gaps: 26/664 ( 3.9%)
# Score: 2024.0
#
#
#=======================================
BSNT_01040___ 1 ATGAATAAGGATCAATCAAAAATTCCGCAGGCGACGGCGAAACGGCTGCC 50
|||||||..|||||.|||||||||||.||.|||||.||.|||||..||||
BPUM_0528___r 1 ATGAATATAGATCAGTCAAAAATTCCACAAGCGACAGCCAAACGTTTGCC 50
BSNT_01040___ 51 GCTTTACTATCGCTTTTTAAAGAATCTTCATGCGTCAGGAAAACAGCGTG 100
|||.||.||.||.||||||||.|||||.|||||.|||||||||||..|.|
BPUM_0528___r 51 GCTATATTACCGTTTTTTAAAAAATCTGCATGCATCAGGAAAACAAAGGG 100
BSNT_01040___ 101 TATCATCCGCTGAACTTAGTGATGCCGTAAAGGTTGATTCTGCCACGATT 150
|.|||||.||.||.|||||||||||.||.||.||.||||||||.||.|||
BPUM_0528___r 101 TGTCATCGGCAGAGCTTAGTGATGCAGTCAAAGTGGATTCTGCTACCATT 150
BSNT_01040___ 151 CGGAGGGATTTTTCCTATTTTGGAGCTCTTGGCAAAAAAGGATACGGATA 200
||..|.||||||||.||.|||||.||.|||||.||.||.||.||.||.||
BPUM_0528___r 151 CGCCGAGATTTTTCGTACTTTGGTGCACTTGGGAAGAAGGGGTATGGCTA 200
BSNT_01040___ 201 TAATGTGGATTA--TTTGCTGTCTTTTTTCCGAAAAACGCTTGATCAGGA 248
||||||.||||| ||| ||.||||.|||.||||.||.|||||.||.||
BPUM_0528___r 201 TAATGTCGATTACCTTT--TGACTTTCTTCAGAAAGACACTTGACCAAGA 248
BSNT_01040___ 249 TGAGATGACAGACGTCATCTTGATTGGTGTCGGGAACTTGGGAACGGCAT 298
|||.|||||..|.|||||..|.||.|||||||||||.||.||.||.||.|
BPUM_0528___r 249 TGAAATGACCAATGTCATGCTCATCGGTGTCGGGAATTTAGGGACTGCTT 298
BSNT_01040___ 299 TTCTTCACTATAATTTCACAAAAAACAATAACACAAAAATTTCTATGGCT 348
||.|.|||||||||||||..|||||.|||||.|||||||||||.||||||
BPUM_0528___r 299 TTTTACACTATAATTTCATCAAAAATAATAATACAAAAATTTCAATGGCT 348
BSNT_01040___ 349 TTTGATATAAATGAGAGTAAAATAGGAACTGAGGTAGGCGGCGTGCCCGT 398
|||||..|.|||||||||||||||||.|.||||.|||||||||||||.||
BPUM_0528___r 349 TTTGACGTCAATGAGAGTAAAATAGGTAGTGAGATAGGCGGCGTGCCTGT 398
BSNT_01040___ 399 CT---------ATAACCTTGATGACCTTGAACAACACGTAAAAGATGAAT 439
|| ||||.|||||.||.|.||..|||.|.|||..||||..|.
BPUM_0528___r 399 CTATGATTTGGATAAGCTTGAAGAGCATGTTCAAGAGGTAGGAGATATAC 448
BSNT_01040___ 440 CAGTTGCCATTCTTACAGTGCCAGCAGTTGCCGCTCAATCCATTACAGAC 489
|.|||||||||.|.|||||.||.||.||.||.||||||.||||||||||.
BPUM_0528___r 449 CTGTTGCCATTTTGACAGTACCTGCCGTAGCAGCTCAACCCATTACAGAT 498
BSNT_01040___ 490 AGATTGGTCGCATTAGGAATCAAGGGAATCCTTAATTTTACGCCGGCCCG 539
.|.|||.|.||..|.||.|||||.||.|||||||||||||||||||||||
BPUM_0528___r 499 CGTTTGATTGCCCTTGGCATCAAAGGGATCCTTAATTTTACGCCGGCCCG 548
BSNT_01040___ 540 TTTGAATGTGCCGGAACACATTCGAATTCATCATATAGATTTAGCAGTTG 589
.|||||||||||||||||||||||||||||||||||||||||.||.||||
BPUM_0528___r 549 ATTGAATGTGCCGGAACACATTCGAATTCATCATATAGATTTGGCGGTTG 598
BSNT_01040___ 590 AGCTTCAGTCACTGGTTTATTTTTTGAAGCATTATTCAGTTTTA-----G 634
|.||||||||.||.||.|||||.||.||||||||.|| |.||| |
BPUM_0528___r 599 AACTTCAGTCTCTTGTGTATTTCTTAAAGCATTACTC--TATTACACAGG 646
BSNT_01040___ 635 AGGAAATCGAATAA 648
||| ||.||
BPUM_0528___r 647 AGG--ATTGA---- 654
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