Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01072 and BPUM_0539

See Amino acid alignment / Visit BSNT_01072 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:41
# Commandline: needle
#    -asequence dna-align/BSNT_01072___ydjM.1.24716.seq
#    -bsequence dna-align/BPUM_0539___ydjM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01072___ydjM-BPUM_0539___ydjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01072___ydjM-BPUM_0539___ydjM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01072___ydjM
# 2: BPUM_0539___ydjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 387
# Identity:     270/387 (69.8%)
# Similarity:   270/387 (69.8%)
# Gaps:          33/387 ( 8.5%)
# Score: 904.0
# 
#
#=======================================

BSNT_01072___      1 ATGTTGAAGAAAGTCATTTTAGC----CGCTTTTATCTT---AGTAGGAA     43
                        .||||.|||       .|||    |||....|||.|   |||||..|
BPUM_0539___y      1 ---ATGAATAAA-------AAGCTTATCGCGACAATCGTAACAGTAGCTA     40

BSNT_01072___     44 G--TACTTTGGGAGCTTTTAGTTTTTCATCA--GATGCCAGTGCGAAACA     89
                     |  ||.|||.|  ||.||||||||.||| ||  || ||.|||||.|||.|
BPUM_0539___y     41 GTTTATTTTTG--GCGTTTAGTTTCTCA-CATGGA-GCAAGTGCAAAAAA     86

BSNT_01072___     90 TGTGAACGGAAATATTACTTGGTATAACGGAGTCGGGAAAAAAGGCTCTT    139
                     .||.|.|||.|||||||||||||||||.||.|||||.|||||||||.|..
BPUM_0539___y     87 AGTAAGCGGCAATATTACTTGGTATAATGGTGTCGGTAAAAAAGGCGCAG    136

BSNT_01072___    140 CAGGTAAGAAACTTGGACATTGGGATTGTGCGACCAAAATCGGATTTGAT    189
                     ..||.||.|||||.||.|||||||||...||.||.|||||.||||||||.
BPUM_0539___y    137 ATGGAAAAAAACTCGGTCATTGGGATGCAGCAACTAAAATGGGATTTGAC    186

BSNT_01072___    190 GTTCCTAGAAACGGGACAAAAATCAGAGCTTATG----CAAAAGCGAAGC    235
                     ||.||.|.|||.||.||||||.|.||||    ||    ||||||||||.|
BPUM_0539___y    187 GTACCGAAAAAAGGTACAAAACTAAGAG----TGACAACAAAAGCGAAAC    232

BSNT_01072___    236 CTAAAAAGGTGATTACGGTTTATAAAAATGATGTTGGCAGAATGCCTAAT    285
                     |..|.||.||||||||.||.||||||.|||||||.||.||||||||.||.
BPUM_0539___y    233 CACATAAAGTGATTACAGTATATAAATATGATGTAGGTAGAATGCCAAAC    282

BSNT_01072___    286 GCAGTGCTGGATGTTAGCCCTAAAGCGTTTAAAGCGCTTGGATACCCATT    335
                     ||.||..|.|||||.|||||.|||||.||.|||||.||.||.||...|..
BPUM_0539___y    283 GCTGTATTAGATGTCAGCCCAAAAGCATTCAAAGCACTAGGGTATAAAAC    332

BSNT_01072___    336 AAGCAAAGGTAAAGTAGCGGGGCATTACAGCTATTAA    372
                     |||.||||||...|||...||||||||||..||||||
BPUM_0539___y    333 AAGTAAAGGTGTCGTAAAAGGGCATTACACTTATTAA    369


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