Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01087 and BPUM_0545
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:42
# Commandline: needle
# -asequence dna-align/BSNT_01087___yeaC.1.24716.seq
# -bsequence dna-align/BPUM_0545___yeaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01087___yeaC-BPUM_0545___yeaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01087___yeaC-BPUM_0545___yeaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01087___yeaC
# 2: BPUM_0545___yeaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1022
# Identity: 696/1022 (68.1%)
# Similarity: 696/1022 (68.1%)
# Gaps: 118/1022 (11.5%)
# Score: 2241.5
#
#
#=======================================
BSNT_01087___ 1 ATGGCATATCAAGAAGACC--TGCATCC---TTTGCTGGGGAAAGCA--G 43
|||||||.|.|.|| ||| |||||.| |||.| |||..| |
BPUM_0545___y 1 ATGGCATTTGATGA--ACCAATGCATTCAGATTTAC-----AAAAAATCG 43
BSNT_01087___ 44 TTGAACATATTAATAGAGTAATGGTTGGAAAACGAGACATCGCCATACTC 93
|.||..|.||.||||.|||.||||||||.||...||||||.||.|||.|.
BPUM_0545___y 44 TAGATAACATCAATAAAGTCATGGTTGGGAAGAAAGACATTGCGATATTA 93
BSNT_01087___ 94 AGCTTAGCAGCCCTTCTTGCCAAAGGGCATGTACTGCTTGAGGATGTACC 143
|||.|.|..||..||.|.||.||.||||||||.||.||.||||||||.||
BPUM_0545___y 94 AGCCTTGTTGCGATTTTGGCGAAGGGGCATGTGCTACTAGAGGATGTGCC 143
BSNT_01087___ 144 CGGAGTCGGAAAAACGATGATGGTCCGCGCGCTGGCAAAGTCAATCGGCG 193
.||.||.||.||.|||||||||||.||.||..|||||||.||.||.|||.
BPUM_0545___y 144 TGGTGTTGGGAAGACGATGATGGTTCGTGCTTTGGCAAAATCGATTGGCT 193
BSNT_01087___ 194 CTGATTTCAAAAGAATCCAATTCACTCCTGA--TTTGCTGCCATCTGATG 241
.|||.||.||..||||.|||||||||||||| ||| ||||||||||||
BPUM_0545___y 194 GTGAGTTTAAGCGAATTCAATTCACTCCTGACCTTT--TGCCATCTGATG 241
BSNT_01087___ 242 TAACAGGGGTATCTATCTATAATGCGAAAACG----ATGGAATTTGAATA 287
|||||||.||.||.||.|||||| ||||.| || ||||||||||.
BPUM_0545___y 242 TAACAGGTGTGTCGATTTATAAT---AAAAAGACAAAT-GAATTTGAATT 287
BSNT_01087___ 288 TCGTCCCGGCCCAATTATGGGAAATATCGTGCTGGCCGATGAAATCAACC 337
|.|.|..||.||.|||||||||.|.|||.|..||||.|||||.|||||||
BPUM_0545___y 288 TAGGCAAGGACCCATTATGGGACAGATCATTTTGGCTGATGAGATCAACC 337
BSNT_01087___ 338 GTACCTCTCCGAAGACACAGTCGGCTTTGCTCGAAGCGATGGAAGAGGGA 387
||||||||||.||.||||||||.||.||||||||.||||||||.||.||.
BPUM_0545___y 338 GTACCTCTCCAAAAACACAGTCTGCATTGCTCGAGGCGATGGAGGAAGGC 387
BSNT_01087___ 388 AGCGTCACGGTAGATGGCCATACGATGCAGCTTGCCGCTCCTTTTTTTGT 437
||.||.||.||.||.||..|.||.||||.||||||.|.|||||||||.||
BPUM_0545___y 388 AGTGTGACAGTGGACGGGGAAACAATGCTGCTTGCTGATCCTTTTTTCGT 437
BSNT_01087___ 438 GATGGCAACGCAAAACCCGGTCGAATATGAAGGGACCTATCCTTTGCCGG 487
.|||||.|||||.||.||.||.||||||||||||||.|||||..|.||.|
BPUM_0545___y 438 CATGGCTACGCAGAATCCAGTGGAATATGAAGGGACTTATCCGCTACCAG 487
BSNT_01087___ 488 AAGCTCAGCTTGACCGTTTTTTATTCAAACTTCGGATGGGTTATCCGTCC 537
||||.||..|.|||||||||||||||||.||.|..|||||.||.|||.||
BPUM_0545___y 488 AAGCGCAAATGGACCGTTTTTTATTCAAGCTCCAAATGGGGTACCCGACC 537
BSNT_01087___ 538 TT--TAATGAAGAGCTTGACGT-CTTATCTCTTCAGGAAAAAAGCCAT-- 582
.| || ||.|||||.||.|| ||.|.|| |.|||| ||||||..|
BPUM_0545___y 538 ATGCTA--GAGGAGCTGGAGGTACTCAACT-TGCAGG--AAAAGCAGTCC 582
BSNT_01087___ 583 CCGATTGAGACGCTTGAGCCGGTTATTGCAAAAGAAGACTTCATCT---- 628
||||||||.|||||..|..|.||.||..||||.|| ||||||
BPUM_0545___y 583 CCGATTGATACGCTCCAAGCAGTGATGACAAAGGA-----TCATCTCCAT 627
BSNT_01087___ 629 -TTTTACAG--AGGGAAGTGCAAAATGTCCGTGCTGATGACA-GCATTAA 674
...|.||| ||.| ||.||.|...|.|.||..|||| || .||||||
BPUM_0545___y 628 GCGCTGCAGCAAGCG--GTTCAGACCATTCATGTGGATG-CATCCATTAA 674
BSNT_01087___ 675 GGAATATATCGTTGAAATTGTGCAGAAAACGAGACAGCATCCTTCTGTTC 724
.||||||||.||.|||||||..|||...|||.|.||.|||||.|||| ||
BPUM_0545___y 675 AGAATATATTGTGGAAATTGCACAGGCGACGCGTCAACATCCATCTG-TC 723
BSNT_01087___ 725 AAT-TAGGCGTCAGTCCGCGCGGCTCAATCGCCCTCATGAAAGCGGCACA 773
.|| ||||.||.|||||..|.||.||.||||||||||||||||||||.||
BPUM_0545___y 724 TATCTAGGTGTGAGTCCAAGGGGATCGATCGCCCTCATGAAAGCGGCTCA 773
BSNT_01087___ 774 GGCATACGCGCTGCTGCATCA-TCGCGACTATGTCATACCGGATGATATT 822
|||.||.||.|||.|| |.|| .||.||.|||||.||.||.||||||.|.
BPUM_0545___y 774 GGCGTATGCACTGTTG-AACAGGCGTGATTATGTGATTCCTGATGATGTA 822
BSNT_01087___ 823 CAATATTTAGCTCCTTTCACGCTGCCGCACCGGATGATGCTT---CATCC 869
||.|||||.|...|||..||..|.|||||.||.||||| || ||| |
BPUM_0545___y 823 CAGTATTTGGTGTCTTATACATTACCGCATCGAATGAT--TTTGACAT-C 869
BSNT_01087___ 870 TGAGGCAAAATTTGAAGGGATTCAGGCAGAAGCGATCGTAAG-GGAGATC 918
.||.||.|..|.|||||||| ||||| | ||||| |
BPUM_0545___y 870 AGAAGCGACGTATGAAGGGA-------AGAAG---------GCGGAGA-C 902
BSNT_01087___ 919 ATGTCAGCTG-----------TGAA--------GGTGCCGGTTCAAAGGT 949
| |.|||| |||| .|||||.|||||||.||
BPUM_0545___y 903 A---CTGCTGCGACAAATGCTTGAACAAATTGGCGTGCCAGTTCAAAAGT 949
BSNT_01087___ 950 CGTCGGTCCGCTGA-------- 963
||.|||
BPUM_0545___y 950 --------CGATGACTCAATGA 963
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