Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00851 and BPUM_0573
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:36
# Commandline: needle
# -asequence dna-align/BSNT_00851___yddD.1.24716.seq
# -bsequence dna-align/BPUM_0573___yddD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00851___yddD-BPUM_0573___yddD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00851___yddD-BPUM_0573___yddD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00851___yddD
# 2: BPUM_0573___yddD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 555
# Identity: 331/555 (59.6%)
# Similarity: 331/555 (59.6%)
# Gaps: 117/555 (21.1%)
# Score: 956.5
#
#
#=======================================
BSNT_00851___ 1 ATGGGGCGTCTGGTGTTCAACTACCGGAAGGCAATGAGAGAGCCGAAAAA 50
|||....|..||||.||.||.|||.|.|||||||||.|.||.||.||.||
BPUM_0573___y 1 ATGACTAGAATGGTCTTTAATTACAGAAAGGCAATGCGCGAACCAAAGAA 50
BSNT_00851___ 51 GATTCAGCA-ATTAACCGAAAATTATTC-GTTACCCTTT-GCAGTTGAGT 97
.||.||..| ||| ||.||.||| ||| |||..||||| |||.|.||||
BPUM_0573___y 51 AATACAAAAGATT-ACGGATAAT--TTCAGTTTGCCTTTCGCAATAGAGT 97
BSNT_00851___ 98 TAATACCGGCTATTAACTATTTCATTTTTGTTGGCCTAT--GCTTTGGG- 144
|.||.||....||.|||||.||.||||||||.| |.|| | |||.||
BPUM_0573___y 98 TGATTCCTATGATCAACTACTTTATTTTTGTCG--CAATTAG-TTTCGGT 144
BSNT_00851___ 145 ---TTCTGGTACGGCGTGAGGATGATTTTTCCTCACGCTTTTGATA--AC 189
|||| || ||.||.||||.|||.||||||..|||.|||||.| ||
BPUM_0573___y 145 TTTTTCT--TA-GGTGTTAGGAAGATATTTCCTAGCGCCTTTGAAAATAC 191
BSNT_00851___ 190 AGTTTCATCATCGTGATTTTTGGAATACCGATTTT---TTTCACAATGCT 236
|.||| |.|||||.|||||||||||.|| ||| |||.||.||..|
BPUM_0573___y 192 ATTTT--TAATCGTAATTTTTGGAATCCC---TTTAGCTTTAACTATTTT 236
BSNT_00851___ 237 TGTTACGAAAATAAAGCCGGAAGGCAAAAACATCTATTTATACTTCATT- 285
|||||..||..|.||.|||||.||.|||||.||.|||||.|||||| |
BPUM_0573___y 237 TGTTAGCAAGGTTAAACCGGAGGGGAAAAATATTTATTTGTACTTC--TG 284
BSNT_00851___ 286 ----GATTTTGCAAAGTATTACTTCTTCATCAAGCTTCCACAAAAGAAGT 331
|.|||| ||.||||...|..|.||.|||.|.|||.|||||||.|
BPUM_0573___y 285 GGGGGTTTTT---AAATATTTGATTATGATTAAGTTCCCAAAAAAGAAAT 331
BSNT_00851___ 332 TTTGCAATGACCGAAGGGTTGAT------TTAAGTAATGAAAAACAAATT 375
||||||||||||| |||| ||.|.||||.|||||.||||
BPUM_0573___y 332 TTTGCAATGACCG------TGATATTCGATTTATTAATCAAAAAGAAAT- 374
BSNT_00851___ 376 GA-GTTTCGAAAACTTGTGAAGGTGGTGGATTATTCGGA----TGAGACT 420
| |||| .||||...|.||||.|||| |||| |||..||
BPUM_0573___y 375 -ACGTTT--TAAACCATTAAAGGAGGTG-------CGGAATTTTGAATCT 414
BSNT_00851___ 421 AAAAACGCCTATGAAGGCAATACACAAGAATTTGCTGTTAACAAGAACGG 470
..||||.||.||||||...|||..|||.||||||.|.||.||.|||.|.|
BPUM_0573___y 415 GGAAACACCAATGAAGAGTATATTCAACAATTTGATTTTGACGAGATCCG 464
BSNT_00851___ 471 GCGACGTGTGGGCGTACTACCGAATAAAAAGCAATTCGATTCCTATGCAA 520
|.||
BPUM_0573___y 465 GTGA---------------------------------------------- 468
BSNT_00851___ 521 AATAA 525
BPUM_0573___y 468 ----- 468
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