Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01103 and BPUM_0597

See Amino acid alignment / Visit BSNT_01103 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:43
# Commandline: needle
#    -asequence dna-align/BSNT_01103___purK.1.24716.seq
#    -bsequence dna-align/BPUM_0597___purK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01103___purK-BPUM_0597___purK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01103___purK-BPUM_0597___purK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01103___purK
# 2: BPUM_0597___purK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1198
# Identity:     822/1198 (68.6%)
# Similarity:   822/1198 (68.6%)
# Gaps:         110/1198 ( 9.2%)
# Score: 2715.5
# 
#
#=======================================

BSNT_01103___      1 TTGTCTAAACAAATCATCTATC----CGGGAGCTGTAATCGGCATTATCG     46
                     |||.||||.||.|.|||.|.||    ||..|.|    |||||.|||||||
BPUM_0597___p      1 TTGGCTAAGCAGACCATTTTTCCAAACGCAACC----ATCGGTATTATCG     46

BSNT_01103___     47 GCGGCGGCCAGCTTGGGAAAATGATGGCTGTGTCCGCCAAACAAATGGGG     96
                     ||||.|||||||||||.|.|...|||||.||...|||.||.|||||||||
BPUM_0597___p     47 GCGGAGGCCAGCTTGGTAGATACATGGCCGTCAGCGCAAAGCAAATGGGG     96

BSNT_01103___     97 TATAAAGTCGCGGTCGTTGATCCGGTGAAAGATTCGCCGTGCGGGCAGGT    146
                     ||....|..||.|||.|.||.|||||.|.|.|.||.||.||.||.|||||
BPUM_0597___p     97 TACCGGGCAGCTGTCTTAGACCCGGTCACACAATCTCCTTGTGGACAGGT    146

BSNT_01103___    147 TGCGGATGTCGAAATTACCGC-TCATTATAATGACCGTGAAGCGATTC-G    194
                     |||.|||...|||||.||.|| .|| ||||.||||| ||.|..||.|| |
BPUM_0597___p    147 TGCTGATACAGAAATCACAGCGGCA-TATAGTGACC-TGGATGGAATCAG    194

BSNT_01103___    195 AAAATTGGCTGAAATCAGCGATATCATCACATATGAGTTTGAAAACATCG    244
                     ..|..|.||.||||||||||||.||.|.||.|||||.||||||||.||.|
BPUM_0597___p    195 GCAGCTCGCAGAAATCAGCGATGTCGTGACCTATGAATTTGAAAATATTG    244

BSNT_01103___    245 ACTATGATGCGCTGCATTGGCTGAAAGATCATGCGTATCTCCCGCAAGGA    294
                     |.||.|||||.||..||....||||.||..|.||..||.|.|||||||||
BPUM_0597___p    245 ATTACGATGCACTCAATCAATTGAAGGAAGAAGCCAATTTACCGCAAGGA    294

BSNT_01103___    295 AGTGAGCTGCTGCTCATTACCCAAAACCGTGAAACAGAGAAAAAAGCAAT    344
                     |||||.||.||.||..|.||.|||||.||.||||||||||||||||..||
BPUM_0597___p    295 AGTGAACTTCTTCTTTTAACTCAAAATCGAGAAACAGAGAAAAAAGGGAT    344

BSNT_01103___    345 TCAATCCGCGGGCTGTGAAGTCGCACCGTACAGCATC-GTCAAAACAAAG    393
                     |..|..|||.||||||||||||||.||.|||.||||| .|||..|..|| 
BPUM_0597___p    345 TGTAGACGCAGGCTGTGAAGTCGCGCCTTACCGCATCATTCATGATGAA-    393

BSNT_01103___    394 AATGAATTGAAACAGGCGGTACAAGAGCTCGGGTTACCCGCAGTTCTGAA    443
                     ||.||..||.||.|.||.||..|.|.||||||.||.||.||.||.|||||
BPUM_0597___p    394 AAAGAGCTGGAAGACGCAGTGGACGTGCTCGGTTTGCCAGCCGTGCTGAA    443

BSNT_01103___    444 GACATGCCGCGGCGGGTACGACGGCAAAGGCCAATTTGTGATAAAAGAAG    493
                     .||.|||.|.|||||.|||||.||.|||||.||.|..||.||.||||||.
BPUM_0597___p    444 AACTTGCAGAGGCGGCTACGATGGAAAAGGACAGTACGTCATCAAAGAAA    493

BSNT_01103___    494 AGGCGCAAATGGAGCAGGCAGCCGCTCTGTTAGAACACGGAACTTGCATT    543
                     |.|..||..|..||.|.|||||.||.|||.|...|||.||||||||.|||
BPUM_0597___p    494 AAGGACAGCTTCAGGAAGCAGCTGCACTGCTCACACATGGAACTTGTATT    543

BSNT_01103___    544 CTTGAAAGCTGGGTTTCTTTTAAAATGGAACTGTCGGTGATCGTC-----    588
                     .|.||||||||||||.|.|||.|||||||.||.||||||||||||     
BPUM_0597___p    544 TTAGAAAGCTGGGTTCCATTTCAAATGGAGCTTTCGGTGATCGTCACTCG    593

BSNT_01103___    589 -----------GTCAGATCGGTAAACGGTGAAATTTCAACGTTTCCGACA    627
                                |..||||||     ||||   |||.|.| ||       .
BPUM_0597___p    594 TTCTATTCATGGGGAGATCG-----CGGT---ATTCCCA-GT-------C    627

BSNT_01103___    628 GCTGAAAACATTCACCACAACAATATTCTTTTCCAAAGCATCGTGCCCGC    677
                     |||||.||||||||..|..||||.|||.|.|||||.|||||.|||||.||
BPUM_0597___p    628 GCTGAGAACATTCATAAGCACAACATTTTGTTCCAGAGCATTGTGCCTGC    677

BSNT_01103___    678 ACGGGTAGA-GAAAGGGATTCAGCAGAAGGC-----TGCTGATCTCGCGG    721
                     |.|.||||| |||| |.||||||.|||||||     |||||     ||  
BPUM_0597___p    678 AAGAGTAGATGAAA-GCATTCAGGAGAAGGCAAAAGTGCTG-----GC--    719

BSNT_01103___    722 TTAA----GCTTGCAGATGAGCTTAACCTTGTTGGACCGCTTGCAGTTGA    767
                       ||    .||.||.||..||||....||.||.||..|.|||||.||.||
BPUM_0597___p    720 --AACGACACTGGCTGAGAAGCTGGGGCTAGTGGGCACACTTGCTGTAGA    767

BSNT_01103___    768 GATGTTCCTGACAGAGGACGGAGAGCTTTTGGTCAATGAACTGGCGCCAA    817
                     ..|||||||||||.|.||.|||||.||..|.|||||||||||||||||..
BPUM_0597___p    768 ACTGTTCCTGACAAACGATGGAGAACTGCTCGTCAATGAACTGGCGCCTC    817

BSNT_01103___    818 GACCGCACAATTCTGGGCATTATACGCTGGACCTTTGCGAGACGAGCCAG    867
                     |.|||||.||||||||.|||||||||||.||..|.||.||||||||.|||
BPUM_0597___p    818 GCCCGCATAATTCTGGTCATTATACGCTCGATTTATGTGAGACGAGTCAG    867

BSNT_01103___    868 TTTGAGCAGCATATCAGAGCGGTATGCGGGCTTCCGCTTGGGAAGACAG-    916
                     |||||.|||||..|..|.|||.|||||||..|.||||||||....|||| 
BPUM_0597___p    868 TTTGAACAGCACGTTCGCGCGATATGCGGTTTACCGCTTGGCGGCACAGC    917

BSNT_01103___    917 ---ATTTGCTGAAGCCGGGCATGATGGTGAATCTT-CTCGGCGATGAAGT    962
                        .||..|.||    ||||||||||||||| ||| .|.|||||||||||
BPUM_0597___p    918 CCTTTTATCAGA----GGGCATGATGGTGAA-CTTATTAGGCGATGAAGT    962

BSNT_01103___    963 GAAGCTTGTTGAGGAAGAC---------------CCGGAGCTTTTAAAAG    997
                                    ||||               ||.||||||.|.||||
BPUM_0597___p    963 ---------------AGACATCCCATTAGAGCATCCCGAGCTTCTCAAAG    997

BSNT_01103___    998 AGGCAAAGCTATATATATACGGAAAACATGAAATCAAAAAAGGCCGCAAA   1047
                     |.||.|||||.|||.||||.|||||.||||||.|.|||.|||||||||||
BPUM_0597___p    998 AAGCGAAGCTTTATCTATATGGAAAGCATGAAGTAAAAGAAGGCCGCAAA   1047

BSNT_01103___   1048 ATGGGGCATATTACATTTATGAAGCAGCCTGAAGACGAATGGAT-TCAGG   1096
                     |||||||||||.||.||||||||.||||..||.||.|||||||| .|| .
BPUM_0597___p   1048 ATGGGGCATATGACCTTTATGAAACAGCTCGATGATGAATGGATGACA-A   1096

BSNT_01103___   1097 AGATCACAAATAAATGGA-TGAATAGAGACGGAGGACAAGCAGAATGA   1143
                     |.||||||||.|.||||| |||| |||||.||||||.|.|...|||||
BPUM_0597___p   1097 ACATCACAAAGATATGGACTGAA-AGAGATGGAGGAAACGGGAAATGA   1143


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