Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01111 and BPUM_0604

See Amino acid alignment / Visit BSNT_01111 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:44
# Commandline: needle
#    -asequence dna-align/BSNT_01111___purM.1.24716.seq
#    -bsequence dna-align/BPUM_0604___purM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01111___purM-BPUM_0604___purM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01111___purM-BPUM_0604___purM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01111___purM
# 2: BPUM_0604___purM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1064
# Identity:     814/1064 (76.5%)
# Similarity:   814/1064 (76.5%)
# Gaps:          46/1064 ( 4.3%)
# Score: 3022.0
# 
#
#=======================================

BSNT_01111___      1 ATGTCTGAAGCATATAAAAACGCAGGAGTTGACATCGAAGCCGGATATGA     50
                     |||||.|||||||||||||||||.||.||.|||||||||||.||.||.||
BPUM_0604___p      1 ATGTCAGAAGCATATAAAAACGCCGGTGTCGACATCGAAGCAGGGTACGA     50

BSNT_01111___     51 AGCCGTAAAACGAATGAAAAAACACGTGGAGCGCACGAAACG-GCTTGGC     99
                     ||||||.|||||||||||||.||||||.||.||.||.||||| || .||.
BPUM_0604___p     51 AGCCGTCAAACGAATGAAAACACACGTTGAACGTACAAAACGAGC-AGGA     99

BSNT_01111___    100 GTTATGG--GCAGCCTTGGCGGTTTTGGCGGCATGTTTGACCTGTCTGAG    147
                     |||||||  |||  ||.||.||.||||||||.|||||.||.||.||||||
BPUM_0604___p    100 GTTATGGGTGCA--CTAGGTGGATTTGGCGGTATGTTCGATCTATCTGAG    147

BSNT_01111___    148 CTTTCTTATCAAAAA-CCAGTTCTCATTTCGGGAACGGACGGTGTCGGAA    196
                     ||..|.|| |||||| ||.|||||..||||.|||||.||.||||||||||
BPUM_0604___p    148 CTGCCATA-CAAAAAGCCCGTTCTTGTTTCAGGAACAGATGGTGTCGGAA    196

BSNT_01111___    197 CAAAATTAAAGCTCGCTTTTTCCATGGATAAGCATGACACGATTGGCGTG    246
                     |.|||||||||||.||.||||..||||||||.||.||.|||||.|||||.
BPUM_0604___p    197 CGAAATTAAAGCTTGCCTTTTTAATGGATAAACACGATACGATCGGCGTC    246

BSNT_01111___    247 GACGCTGTTGCAATGTGTGTCAATGACGTGCTGGCACAAGGTGCAGAGCC    296
                     ||.||.||.||.|||||||||||.||.|||||.||||||||.|||||.||
BPUM_0604___p    247 GATGCCGTGGCTATGTGTGTCAACGATGTGCTTGCACAAGGGGCAGAACC    296

BSNT_01111___    297 GCTGTTTTTCCTCGATTATTTAGCGGTCGGCAAAGCGGACCCAGTGAAAA    346
                     |||.||||||.|.|||||.|||||.||.||.|||||.||.||.||.||||
BPUM_0604___p    297 GCTCTTTTTCTTAGATTACTTAGCCGTTGGAAAAGCAGATCCGGTAAAAA    346

BSNT_01111___    347 TTGAACAGATTGTACAAGGTGTTGCGGAAGGCTGTGAGCAGTCAGGTTCA    396
                     |||||...|||||..|||||||.||.||.||.|||||||||||.||||||
BPUM_0604___p    347 TTGAATCCATTGTTAAAGGTGTGGCTGACGGATGTGAGCAGTCTGGTTCA    396

BSNT_01111___    397 GC-CTTAGTCGGCGGTGAAACGGCTGAAATGCCGGGACTCTATACAGCTG    445
                     || ||| |||||.|||||.||.||.||||||||.||.||.||.||||..|
BPUM_0604___p    397 GCACTT-GTCGGTGGTGAGACAGCCGAAATGCCAGGTCTTTACACAGAAG    445

BSNT_01111___    446 ATGAATACGATATTGCCGGTTTCTCAGTCGGAGTGGCAGAAAAGGACGAA    495
                     |.|||||.||||||||.|||||.|||||.||.||.|..|||||.||||||
BPUM_0604___p    446 AAGAATATGATATTGCTGGTTTTTCAGTAGGTGTCGTTGAAAAAGACGAA    495

BSNT_01111___    496 ATCGTCACTGGAGAAAACATCAAAGAGGGTCATCTTTTGATCGGCCTCAG    545
                     |||||.||.|||.|.|.||||||||||||.|||.|..||||.||.|||||
BPUM_0604___p    496 ATCGTGACAGGAAACAGCATCAAAGAGGGGCATTTGCTGATTGGACTCAG    545

BSNT_01111___    546 CTCCAGCGGTCTTCACAGCAACGGATTTTCCCTTGTCAGAAAAGTGCTTC    595
                     |||.|||||..||||.|||||.||||.|||.||.||..|.|||||..|.|
BPUM_0604___p    546 CTCAAGCGGAATTCATAGCAATGGATATTCTCTCGTTCGTAAAGTTTTGC    595

BSNT_01111___    596 TGGATGATGCGGAGCTTGACCTCGATACAACATATGAGCCGTTTGAACGC    645
                     ||||.||.||.|..|||||..|..||..|||.|||||.||.|||.||.|.
BPUM_0604___p    596 TGGAAGACGCTGGTCTTGATTTGCATCAAACGTATGAACCTTTTAAAAGA    645

BSNT_01111___    646 CCGCTTGGCGAGGAGTTGCTTGAACCGACAAGGATTTACGTGAAGCCTGT    695
                     |||||.||.||.|||.|.||||||||.||||..|||||.|||||||||||
BPUM_0604___p    646 CCGCTCGGTGAAGAGCTTCTTGAACCAACAAAAATTTATGTGAAGCCTGT    695

BSNT_01111___    696 GCTTGCCGCGGTC--------AAAAG-CGGAAAAATCGACGGCATGGCGC    736
                     .|         ||        ||||| |||.|||.|.|||||||||||.|
BPUM_0604___p    696 TC---------TCAAACAAGTAAAAGCCGGCAAAGTGGACGGCATGGCAC    736

BSNT_01111___    737 ACGTGACAGGCGGAGGATTTATTGAAAATATTCCGCGTATGCTTCCGGAA    786
                     |.||||||||.||.||.||||||||.|||.|.||.||||||||.||.|||
BPUM_0604___p    737 ATGTGACAGGTGGCGGTTTTATTGAGAATTTACCACGTATGCTGCCTGAA    786

BSNT_01111___    787 GG-CTTAAGTGCG--GAAATTGATCATGGCTCATGGCCGATCCCGCCAAT    833
                     || |||   .|||  ||.||||||.|.|||||||||||..|.||.||.||
BPUM_0604___p    787 GGTCTT---GGCGTTGAGATTGATAACGGCTCATGGCCAGTACCACCCAT    833

BSNT_01111___    834 TTT-TTCTTTCTTGCAAGAGTATGGCAAGCTAAAGGAAGAAGACATGTTC    882
                     ||| |.||||.|| |||||..|.||..||.||||||.||||||.||||||
BPUM_0604___p    834 TTTCTCCTTTATT-CAAGAAAAAGGTCAGTTAAAGGCAGAAGAGATGTTC    882

BSNT_01111___    883 AACGTCTTTAATATGGGTATCGGTTTTGTTTTGGCTGTCAAAGAAGAGCA    932
                     |||||.||||||||||||||.||.|||||..|.|||||.|||||.||..|
BPUM_0604___p    883 AACGTGTTTAATATGGGTATTGGCTTTGTCCTAGCTGTAAAAGAGGACGA    932

BSNT_01111___    933 T-TTGACAGATGTGATCGGAACGCTTGA--AAGCCATGGAGAAAAAGCCT    979
                     | ||| ..||||||||..||..||||||  |||  |||||||.|||||.|
BPUM_0604___p    933 TCTTG-TGGATGTGATTAGAGAGCTTGAACAAG--ATGGAGAGAAAGCAT    979

BSNT_01111___    980 ATTTAATCGGGCGTGTGAAAAAAGGTGAAGGCGTCACATTCGGCGGTGCG   1029
                     .|.|.|||||.|||||..|||||||.|||||.|||||||||||||||  |
BPUM_0604___p    980 TTCTCATCGGACGTGTTCAAAAAGGAGAAGGTGTCACATTCGGCGGT--G   1027

BSNT_01111___   1030 GCA--CTTTCATGA   1041
                     |.|  ||.||||||
BPUM_0604___p   1028 GAAGCCTCTCATGA   1041


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