Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03222 and BPUM_0612

See Amino acid alignment / Visit BSNT_03222 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_03222___yodT.1.24716.seq
#    -bsequence dna-align/BPUM_0612___yodT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03222___yodT-BPUM_0612___yodT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03222___yodT-BPUM_0612___yodT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03222___yodT
# 2: BPUM_0612___yodT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1525
# Identity:     886/1525 (58.1%)
# Similarity:   886/1525 (58.1%)
# Gaps:         350/1525 (23.0%)
# Score: 2181.0
# 
#
#=======================================

BSNT_03222___      1 ATGAGCAG--------TTATTTGATTAAGCCAGAGCTTAGCTCGGC-CTA     41
                       |.|.||        |||.||.||.||.|| ||..||...||.|| .||
BPUM_0612___y      1 --GTGGAGACCCGGGATTACTTAATCAAACC-GATGTTGAATCAGCATTA     47

BSNT_03222___     42 TCCGGTTGTCAGTTATGCGA-AGGG--TTCATATGTTTATGATCAGACCG     88
                     |||.| ||.|.||.|...|| ||||  ||  |||.|.|||||||.|..||
BPUM_0612___y     48 TCCTG-TGGCTGTGAAAGGAGAGGGAATT--TATTTATATGATCGGGACG     94

BSNT_03222___     89 GAAAAAAATATCTCGACGGCTCGTCAGGTGCGGTGACATGTAA-TATCGG    137
                     |||||||||||.|.||.|||||.||.||.||.||.|| .|.|| |||.||
BPUM_0612___y     95 GAAAAAAATATATAGATGGCTCATCGGGGGCTGTCAC-GGCAAGTATTGG    143

BSNT_03222___    138 CCACGGAGTTCG---------TGATG---TGACTGAG-AAGCTGAAAGAA    174
                     .||.||..|.||         |||||   ||||.||| ||||.||||   
BPUM_0612___y    144 ACATGGCATACGTGAAATCATTGATGCCATGACCGAGCAAGCGGAAA---    190

BSNT_03222___    175 CAGCTTGATCAGGTGTCTTTTGCTTACCGCTCACAGTTTACGAGTGAGCC    224
                               |.|||...|||.|.|||.|.|||||.||.||.|.|||.||
BPUM_0612___y    191 ----------AAGTGAGCTTTACGTACAGATCACAATTCACAAATGAACC    230

BSNT_03222___    225 CGCCGA-------GC-----AATT-AGC-CGCTCTCTTGGCACAGGAGCT    260
                     .||.||       ||     |||| ||| .|||   |||.| ||||   |
BPUM_0612___y    231 AGCAGAAGATCTTGCTTATGAATTGAGCAAGCT---TTGTC-CAGG---T    273

BSNT_03222___    261 GCCCGGAGATGTGAATTGGTCTTTTTTTGTCAACAGCGGGTCAGAAGCGA    310
                     ..||       ||||.|||||||||||||||...||.||.|||||.||.|
BPUM_0612___y    274 AACC-------TGAACTGGTCTTTTTTTGTCGGAAGTGGATCAGAGGCAA    316

BSNT_03222___    311 TAGAAACAGCTATGAAAATCGCCATTCAGTATTGGCA-------GGAAA-    352
                     ..||||||||.||||||||.||.||||||.|||||||       ||||| 
BPUM_0612___y    317 CGGAAACAGCCATGAAAATTGCTATTCAGCATTGGCAGGAGCAGGGAAAG    366

BSNT_03222___    353 ----AAAAGCAAACACAAAAATCCATCTTTTTGTCTCGATGGAGCAGTTA    398
                         |.||| ||.||||           ||.|.||||||||||..|||||
BPUM_0612___y    367 GCGGAGAAG-AATCACA-----------TTATTTCTCGATGGATGAGTTA    404

BSNT_03222___    399 CCACGGAATAACTTTGGGAGCGCTTTCATTGTCTGGTTTTTATGAAAGGA    448
                     .|||||.||.||..|.||.|||||.||..||||.||...|..||.|||||
BPUM_0612___y    405 TCACGGCATCACCCTCGGTGCGCTGTCGATGTCCGGACATATTGCAAGGA    454

BSNT_03222___    449 GATACCG-GTTCACCCAT--CTCATTGAGCGGTATCC--AGCTATCTCAG    493
                     ||.|.|| .||.|.||||  |||   ||...|.||||  .|||.||||  
BPUM_0612___y    455 GAGAGCGCTTTGAACCATTGCTC---GAAAAGAATCCGGTGCTGTCTC--    499

BSNT_03222___    494 CTCCACATATTTATCG---------GCTGAATTATGAGACGG-AAGAAGA    533
                     |.|||.|||..|||||         ||.|||..|  |||.|| |||.|| 
BPUM_0612___y    500 CGCCATATAGCTATCGTTCATGGCTGCCGAAGGA--AGAGGGCAAGCAG-    546

BSNT_03222___    534 CTTTGTTCAGACTG-------CAGCTGATGAACTGGACAC----------    566
                         |||  ||.||       |||     |||.|..|.||          
BPUM_0612___y    547 ----GTT--GAATGGTATGTCCAG-----GAATTTAAAACGGTCATTCAG    585

BSNT_03222___    567 --TATGATCAAAAGAATCGGAAGCCAATTCATCGCCGGCTTTGTGGCTGA    614
                       ||| |..||||||    ||.|       |||||||..|||.|.||.||
BPUM_0612___y    586 CGTAT-AGGAAAAGA----GAGG-------ATCGCCGCTTTTATTGCAGA    623

BSNT_03222___    615 GCCTATTATTGGTGCTGCAGGAGCAGCG--ATTACTCCGCCTCCGGGATA    662
                     |||.|||.|.||.||..|.|||||.|||  |.||  |||||....|||||
BPUM_0612___y    624 GCCGATTGTCGGGGCATCGGGAGCGGCGCTAGTA--CCGCCAGACGGATA    671

BSNT_03222___    663 TTATGAGAG--ATTAA--------GTGAGGTATGCCGCACACACGATGTG    702
                     ||.||| ||  ||.||        ||||||         .|.|||||.| 
BPUM_0612___y    672 TTTTGA-AGCAATGAAGCGTGTCTGTGAGG---------AAAACGATAT-    710

BSNT_03222___    703 CTTT--TTATTGCAGATGAAGTGATGACGGGGCTTGGGA-GAACAGGAAG    749
                      |||  |.||||||||.|||||.||||| .|||||.||| ||||.||.|.
BPUM_0612___y    711 -TTTAATGATTGCAGACGAAGTCATGAC-AGGCTTTGGACGAACTGGGAA    758

BSNT_03222___    750 GATGCTCGCGACAGAGCATTGGGACACCGTACCTGATATTGCTGTACT-G    798
                     .|||.|.||||..||||||||||.|..||||||.||||||...||.|| |
BPUM_0612___y    759 AATGTTTGCGATGGAGCATTGGGGCGTCGTACCAGATATTATGGTTCTCG    808

BSNT_03222___    799 GGGAAGGGACTCGGTGCGGGGTATGCACCTATTGCCGCTGCCGTCGTATC    848
                     |..|||||| |..||||.||.|||.||||.|||||.||.||||||..|.|
BPUM_0612___y    809 GCAAAGGGA-TGAGTGCTGGCTATTCACCGATTGCGGCAGCCGTCTCAGC    857

BSNT_03222___    849 TGATTCTATTATTGAAACGATAAAACAA--------GGGTCAGG---TGT    887
                     .|||..|.|.||.|   ||     .|||        ||.||.||   .||
BPUM_0612___y    858 GGATCATGTCATCG---CG-----CCAATTCTGAGCGGTTCCGGCTCAGT    899

BSNT_03222___    888 GATTATGAGC-GGTCACACATATAGT-GCACATCC-CTATTCAGCCAAAG    934
                     |||    .|| |||||.||.|||||| ||| |||| || |||||||   |
BPUM_0612___y    900 GAT----GGCAGGTCATACCTATAGTGGCA-ATCCGCT-TTCAGCC---G    940

BSNT_03222___    935 CTG---CTCTTGAAGTTTTGCGATATGTGTTAAAGCA-CGGCTTGATCAA    980
                     |.|   |.||.|..||..|.||.|||.||..|||.|| |.||||..| .|
BPUM_0612___y    941 CCGTCTCACTGGCTGTCATTCGTTATATGAAAAAACATCAGCTTCCT-GA    989

BSNT_03222___    981 ACAATCAGAAAAAAAGGGCGCTGTGCTG-----------AAGAA------   1013
                     ||.|.|          ||..|||| |||           |.|||      
BPUM_0612___y    990 ACGAGC----------GGATCTGT-CTGGTCGCTATTTAATGAACGCCTT   1028

BSNT_03222___   1014 AAAGCTTGATGAGGCGGCATCTCAAAGC--GGCATTATAGGTGATGTGCG   1061
                     ||||      ||.|.|..|  .||||.|  ..|||.|||||.||||||.|
BPUM_0612___y   1029 AAAG------GAAGTGCAA--ACAAACCATTTCATCATAGGAGATGTGAG   1070

BSNT_03222___   1062 CGGAAAAGGACTGCT-ATTAGGCATTGAATTTGTGGCAGACC--------   1102
                     .|||||.|||||||| ||| ||||||||.|||||.|||||||        
BPUM_0612___y   1071 AGGAAAGGGACTGCTCATT-GGCATTGAGTTTGTCGCAGACCGCCTGTCG   1119

BSNT_03222___   1103 AAAAAACGAAGAAAGTGTTTCC-GCCAGAGCAGGC---GGTAACCCAGCT   1148
                     ||||.||.|        ||||| |||    ||.||   ..|.||.|| .|
BPUM_0612___y   1120 AAAACACCA--------TTTCCTGCC----CATGCTCAAATGACGCA-TT   1156

BSNT_03222___   1149 TATT------GTCAGCGAGGCGAAAAAACGCGGGC-TGATTGTTTATCCT   1191
                     ||.|      |.||||||.||.|||      .||| ||.|.||.||.||.
BPUM_0612___y   1157 TAGTCGTTGAGACAGCGAAGCAAAA------TGGCTTGCTCGTATACCCA   1200

BSNT_03222___   1192 TCCAAAGCTGGAATAGACAGTGGAGAAGGAGATGCTG---TCATTATTGC   1238
                     .|.|..||.||   .||...|||||..||||.|||.|   ||||.|||||
BPUM_0612___y   1201 GCAAGTGCCGG---TGAGGATGGAGTGGGAGGTGCAGCGATCATGATTGC   1247

BSNT_03222___   1239 TCCTCCTTTTACCAT--TTCAGACGTTGAAATGGAAGAGCTTATCTCTAT   1286
                     .||.||..||.||||  ..|||..|  ||.|||||.||.||.|| ||.||
BPUM_0612___y   1248 ACCGCCGCTTTCCATCACGCAGCAG--GAGATGGATGAACTCAT-TCAAT   1294

BSNT_03222___   1287 TTTTT---CAGA--AACAGTTGCAGCGGTCGAA-AAAAACTTAAAAA---   1327
                     |.|||   ||||  |.||  .|||  ||||||| ||.||.|.|..||   
BPUM_0612___y   1295 TATTTGAGCAGACCATCA--CGCA--GGTCGAACAAGAAGTCATCAACCG   1340

BSNT_03222___   1328 AGGATT------------GA-----   1335
                     |||.||            ||     
BPUM_0612___y   1341 AGGGTTTTTCCCATCTGCGATGTAG   1365


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