Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03220 and BPUM_0614

See Amino acid alignment / Visit BSNT_03220 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_03220___yodR.1.24716.seq
#    -bsequence dna-align/BPUM_0614___yodR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03220___yodR-BPUM_0614___yodR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03220___yodR-BPUM_0614___yodR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03220___yodR
# 2: BPUM_0614___yodR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 750
# Identity:     433/750 (57.7%)
# Similarity:   433/750 (57.7%)
# Gaps:         180/750 (24.0%)
# Score: 1191.5
# 
#
#=======================================

BSNT_03220___      1 ATGGGCTTGGGAGTAGCA--GA---AAGAGAACAGATTGCAAAACGCGCT     45
                     ||||||.||||||  .||  ||   ||||.|.|..||.||.|||||.||.
BPUM_0614___y      1 ATGGGCATGGGAG--ACATCGATTTAAGACACCGCATAGCCAAACGTGCG     48

BSNT_03220___     46 GCTACTGAAATT-AAGCAGGGCATGATTGTGAATCTCGGTATCGGTATCC     94
                     ||....|||||| ||| |.||||||||.||.|||||.||.||.|||||| 
BPUM_0614___y     49 GCGCAGGAAATTGAAG-ATGGCATGATCGTCAATCTTGGGATTGGTATC-     96

BSNT_03220___     95 CATCCTTGGTACCGA-ACTTTTTGAAGCCTG----ACA-TGCAGGTCAT-    137
                                |||| ||   |||.|||  |    ||| |.|||..||| 
BPUM_0614___y     97 -----------CCGACAC---TTGCAGC--GGAATACATTCCAGCGCATT    130

BSNT_03220___    138 ----------GTTTCAAGCGGAAAACGGTGTCCTTGGCATTGGAGAAAG-    176
                               |.||||.||.||||||||   |.||   ||.||.|.|.| 
BPUM_0614___y    131 ACAACGTATGGCTTCATGCTGAAAACGG---CATT---ATGGGGGCAGGC    174

BSNT_03220___    177 -----TCCCGAAAAGGGAGAAGAGGATGCGCATTTATGCAACGCCGCGGG    221
                          .||.|.|.|.||||||||.|||.|..||||.||||||||||..||
BPUM_0614___y    175 GCCTCACCAGTACAAGGAGAAGAAGATCCAAATTTGTGCAACGCCGGCGG    224

BSNT_03220___    222 ATATCCTGTCCGCGCTGT--------AAAAGG-GGCGTCTTATTTTGATA    262
                     .||||||.|        |        |||||| ||| ||.||..|.||.|
BPUM_0614___y    225 CTATCCTAT--------TACATTAACAAAAGGCGGC-TCATACATGGACA    265

BSNT_03220___    263 CAACCA-TGTCTTTTGCAATGATCAGAAAAGGCAAAATTGACATTACGAT    311
                     ..||.| || ||||||..||.||..|||||||||...|.||.||.||.||
BPUM_0614___y    266 GCACGACTG-CTTTTGGCATTATTCGAAAAGGCATGCTGGATATGACCAT    314

BSNT_03220___    312 TTTAGGCGCCCTGCAGGTGAGCCAATCA-GGAGATTTGGCAAATTGGCTT    360
                     ||||||.||.||..|.||.|| ||.||| ||.|||.|.||.||||||.||
BPUM_0614___y    315 TTTAGGTGCACTTGAAGTAAG-CAGTCAGGGCGATCTTGCGAATTGGATT    363

BSNT_03220___    361 GTTCCGGGAAAAAAGGTGCCTGGTATGGGCGGGGCGATGGAGCTTGCCCA    410
                     ||.||.||.|||...||.||.||.||||||||.|||||.||||||||.||
BPUM_0614___y    364 GTGCCAGGTAAACGAGTACCCGGGATGGGCGGAGCGATTGAGCTTGCACA    413

BSNT_03220___    411 AAAAGCGAAAAAAGTGGTTGTCGTCATGAGTCA--------------TAC    446
                     |||.||||||||.||.||.||.||.|||||.||              .||
BPUM_0614___y    414 AAAGGCGAAAAAGGTTGTGGTGGTGATGAGCCACCTCGATAAACACGGAC    463

BSNT_03220___    447 AGATCAAAAGGGAA---GGCCTAAATTAACAGAAAGATGTACGCTGCCAT    493
                     | ||||||.|.|||   .|||                ||.||..||||.|
BPUM_0614___y    464 A-ATCAAAGGTGAAATCTGCC----------------TGCACATTGCCCT    496

BSNT_03220___    494 TAACTGCTGCAGGC-TGTGTAGATTTGATTATTACCGAAAAAGCGGTTCT    542
                     ||||.|| |.||.| ||||||||||||||||||||.||.|..||.||..|
BPUM_0614___y    497 TAACGGC-GAAGTCTTGTGTAGATTTGATTATTACGGATATGGCCGTCAT    545

BSNT_03220___    543 TGAGGTCGATAGCCATCAC-----TTCATTTTAAAAGAGCTGATGAATGG    587
                     |||||||.|     |||||     .||||||||...||..|.|||     
BPUM_0614___y    546 TGAGGTCAA-----ATCACAGCTGCTCATTTTACGTGAAGTCATG-----    585

BSNT_03220___    588 CTCGACAAT-------CGATGAGGTGACGAGGCTGACAGAAG----CTGA    626
                       |.||..|       .||.||.||.|..|||..||||||.|    ||.|
BPUM_0614___y    586 --CCACCGTTTCAGCCGGAGGATGTCATAAGGGCGACAGAGGCACCCTTA    633

BSNT_03220___    627 AATCAAAATAGATATGCCTTTT---------TCTTAA-------------    654
                     |                 ||||         |.||||             
BPUM_0614___y    634 A-----------------TTTTAGCGCCTGATGTTAAATCTGTTGTGTAG    666


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