Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01919 and BPUM_0628

See Amino acid alignment / Visit BSNT_01919 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:27
# Commandline: needle
#    -asequence dna-align/BSNT_01919___yjbB.1.24716.seq
#    -bsequence dna-align/BPUM_0628___yfmI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01919___yjbB-BPUM_0628___yfmI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01919___yjbB-BPUM_0628___yfmI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01919___yjbB
# 2: BPUM_0628___yfmI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1591
# Identity:     703/1591 (44.2%)
# Similarity:   703/1591 (44.2%)
# Gaps:         686/1591 (43.1%)
# Score: 1202.5
# 
#
#=======================================

BSNT_01919___      1 ----ATGATAACATTTACAATTAGAGGAAAAAAACGGAGGCGAAATACGA     46
                         .||||||   |.|     ||||    ||||.||| |..|||||.||
BPUM_0628___y      1 ATGGGTGATAA---TGA-----AGAG----AAAATGGA-GATAAATATGA     37

BSNT_01919___     47 TTCAATTTCTGCATAACAAAAATGTTTTTGCACTATTGCTGTCT------     90
                                   ||.|.||||..||||  |||.||    |.|      
BPUM_0628___y     38 --------------AAAACAAATCATTTT--ACTTTT----TATTAGGGG     67

BSNT_01919___     91 --CAATC---------TTTT---CAATCTTTAGCAGGA-GTCCTCG----    121
                       |||||         ||||   .|.|||||    |.| |||||||    
BPUM_0628___y     68 GACAATCCCTAGCTAATTTTGGGGATTCTTT----GTATGTCCTCGTTCT    113

BSNT_01919___    122 --------TCACA-ATCGTTT--------------TAATGGTCCGGGTCT    148
                             |.||| |||..||              ||||        |..
BPUM_0628___y    114 AACCATTCTGACATATCAATTAACAAACTCTACACTAAT--------TGC    155

BSNT_01919___    149 ATCAA--ATGACTGACT--CTGTTTTT-----------TTGGCG------    177
                     |||||  .||.|||.||  |.||||.|           ||||||      
BPUM_0628___y    156 ATCAATGGTGGCTGTCTCACAGTTTGTTGGACAAGCACTTGGCGCAGTAC    205

BSNT_01919___    178 ---GGCCTTATTTTATCGT---------------------TCA-TGTC-G    201
                        ..||||..||||| ||                     ||| |.|| .
BPUM_0628___y    206 TCATTCCTTTCTTTAT-GTATCAATTTAAGCTGAAAAGACTCATTATCTA    254

BSNT_01919___    202 TTTGCGAGTATAGCAGCAAGCTTTTGCGTCTCTCCGG-TGCTTCGCATTC    250
                     |||||.|.|||..||  ||    |||| |.|||.||| |||||       
BPUM_0628___y    255 TTTGCAAATATGTCA--AA----TTGC-TTTCTTCGGTTGCTT-------    290

BSNT_01919___    251 TCGGTTTTAAAAAGGTGCTTGTGGGAGCGAATCTGCTGAGAGCGGTCTTT    300
                       |.||||.|                                     |||
BPUM_0628___y    291 --GATTTTCA-------------------------------------TTT    301

BSNT_01919___    301 ACAATCCTGATGGCATACAGCGTCACTCATCACGGACAGGCATTCTTTT-    349
                     |.|.||         ||||     ||| ||||           .||||| 
BPUM_0628___y    302 ATATTC---------TACA-----ACT-ATCA-----------ACTTTTA    325

BSNT_01919___    350 GGATTACGCTGCTGTTTGT-GTTTTGTTTTTCCTTCGCGGGCGCTTTTTT    398
                     ..|||.|.||..|.|||.| .||.|.||||||           ||||.||
BPUM_0628___y    326 CTATTCCTCTCTTTTTTATCATTGTATTTTTC-----------CTTTCTT    364

BSNT_01919___    399 TCA-----GCCGGCAAGATT-----------TGCGCTGCTGCCGATTATT    432
                     |.|     |..||.|..|||           |.||.||.|.||...|.|.
BPUM_0628___y    365 TGATAGATGGAGGAACCATTCCTGTTCGAAATTCGATGATCCCACGTCTA    414

BSNT_01919___    433 GTTCCAAAGAAGCAATAT-GTAAAAGCGAATGGTGTGATCT---CTCTCT    478
                     ||...|||||| |..|.| .|||||||.|||.||...||||   ||   |
BPUM_0628___y    415 GTAGAAAAGAA-CTTTTTACTAAAAGCTAATAGTTATATCTTAACT---T    460

BSNT_01919___    479 CGAATCAATTATTC--TTAACAGCAGGCTGGGGCCTT---GGA-------    516
                     |..|.|||||..||  ||.||  ..||||||   |||   |||       
BPUM_0628___y    461 CTGACCAATTGGTCCTTTTAC--TTGGCTGG---CTTTTAGGAGGGCTGT    505

BSNT_01919___    517 -----GGCCTTCT--GACGTACGCCGTCCCTTTTGAACTC--ATTGTCGG    557
                          |||.||||  |||   |.|.|     |||   |||  ||||.||.
BPUM_0628___y    506 TTATTGGCATTCTTGGAC---CACAG-----TTT---CTCCTATTGACGA    544

BSNT_01919___    558 CGC---TGCTATTTGCCTGTTTGT--------TCTATCGGGAGCT-TCCA    595
                     |.|   |.||||   .|.||||||        |||||     ||| |..|
BPUM_0628___y    545 CACTTGTTCTAT---ACAGTTTGTCGCTCATATCTAT-----GCTCTTTA    586

BSNT_01919___    596 TCAGTG----------TGCTGCATGTAAATGAAGAAGAGGCTGTAGGAAC    635
                     |||.||          |||.||       |.||.|||       ||.|||
BPUM_0628___y    587 TCATTGATACTGGGGCTGCCGC-------TAAACAAG-------AGCAAC    622

BSNT_01919___    636 TG-CTGAAACAGCATCTGCCAGAAGTAT-------ATGGAAG--GATTTA    675
                     .| |||||.||..|.||.|.|| .||.|       |||||||  .||.| 
BPUM_0628___y    623 AGTCTGAATCATTAGCTACAAG-GGTCTTTTCAGGATGGAAGCTCATGT-    670

BSNT_01919___    676 ATGATCATCC--CTATTGTAAGAGACATTA---------------CTGTA    708
                     ||||..|.||  |||||..|    ||||||               |||| 
BPUM_0628___y    671 ATGAAAAGCCTACTATTCGA----ACATTAACGATTTTAGAAATGCTGT-    715

BSNT_01919___    709 ATGGACATGA----TAGAAG-CTTTGG-CGGGTTCCGTATGGTCATCTGC    752
                         .|||||    |||||| .|.||| |.|||.||.|            
BPUM_0628___y    716 ----CCATGAGTGGTAGAAGTATATGGACTGGTGCCAT------------    749

BSNT_01919___    753 TATTCTCCTCGCAT------------TTACTGCGGCTGTTTTGCATGAAA    790
                     ||||||..| |.||            ||||..|.||       || ||||
BPUM_0628___y    750 TATTCTTGT-GTATGTCACAGAAGTCTTACACCAGC-------CA-GAAA    790

BSNT_01919___    791 CAGAGGTGTGGTGGGGGATGTTTAACGCTTCCTATTTTATAGGCGCAATT    840
                     ||      ||||||||..|..|||||||...|||||||..|||..|.|||
BPUM_0628___y    791 CA------TGGTGGGGCTTTATTAACGCAAGCTATTTTGGAGGAACCATT    834

BSNT_01919___    841 GTCGGCAGTGTGAT-----TGCCATTCGTTTTTCTTC-------------    872
                     .|.|||.|..||.|     |||..||||        |             
BPUM_0628___y    835 CTAGGCGGCCTGCTCGTGCTGCGGTTCG--------CAAAACATGTGGAA    876

BSNT_01919___    873 -----TTTTTTTGAGCGGAATATGGGCTATGCCATTAT-----GTTCA--    910
                          |||.|||||.|               .||||.|     |||||  
BPUM_0628___y    877 CAGCGTTTGTTTGAAC---------------ACATTTTTTACAGTTCAGT    911

BSNT_01919___    911 GCTCGCTTGTAATGTCGGCGCTGACCCTTTTGTTT---------TCATTT    951
                     |.||| |||      |.|.|||.|||| |||||||         |||  |
BPUM_0628___y    912 GATCG-TTG------CTGTGCTAACCC-TTTGTTTAGGGTTGAATCA--T    951

BSNT_01919___    952 TCTCCAGTCCCATTTTTATGCGCTCTG--GCTTGTGCTGCAATGGGGCCT    999
                     |||.||        |..|||.| |.||  |.||||             ||
BPUM_0628___y    952 TCTGCA--------TGGATGAG-TTTGTTGTTTGT-------------CT    979

BSNT_01919___   1000 TTTTATCAGGTGCGTGATATTTGCCAGGAAACCAT---GCT--GCAGGAG   1044
                     ||||||.|||            |||||    ||.|   |||  ||||.| 
BPUM_0628___y    980 TTTTATTAGG------------GCCAG----CCTTTCAGCTTCGCAGCA-   1012

BSNT_01919___   1045 GTT---ATTC---CC----GAGCAGAAAC-------GAATCGGAATCATG   1077
                      ||   ||||   ||    .|..|||.||       |||...||||    
BPUM_0628___y   1013 -TTTCCATTCGTACCTATGTACAAGATACACTGAGTGAAATTGAAT----   1057

BSNT_01919___   1078 GCTGCAAAAAATGCGATTTTGACTCCTTGGTCAGGCGTCACC--------   1119
                       |||..|||||.|.|              ||||  .|||.|        
BPUM_0628___y   1058 --TGCCCAAAATACTA--------------TCAG--CTCAACATACACTA   1089

BSNT_01919___   1120 ------------TAC------TCCA------TTATGGGGCTAG-----TG   1140
                                 |||      ||||      |||||     ||     ||
BPUM_0628___y   1090 TCAACTTTTATATACGGAATGTCCATCCTTGTTATG-----AGCACCATG   1134

BSNT_01919___   1141 GCTGATGCTGC--TGGTGCGAAAATAG-CTTTTATCGCGGCTGCTGCATT   1187
                     .||||| || |  |||.||.|.|.|.| ||||                  
BPUM_0628___y   1135 ACTGAT-CT-CTTTGGGGCAAGAGTCGTCTTT------------------   1164

BSNT_01919___   1188 ATATATCATGACATT--TCTGATTGCACTGGCGCAGCCCCGTCTGGTTCA   1235
                      |.|||||  ||.||  .|||.||  ||||...|.|||        |||.
BPUM_0628___y   1165 -TTTATCA--ACGTTGCCCTGTTT--ACTGTGTCGGCC--------TTCC   1201

BSNT_01919___   1236 TTACAGGCGAG---AAAATCGAGTTCAATGA----------   1263
                     |..|| .|.||   ||||        |||||          
BPUM_0628___y   1202 TAGCA-TCTAGATTAAAA--------AATGAACATATTTAG   1233


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