Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02893 and BPUM_0666
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_02893.1.24716.seq
# -bsequence dna-align/BPUM_0666.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02893-BPUM_0666.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02893-BPUM_0666.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02893
# 2: BPUM_0666
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 749
# Identity: 316/749 (42.2%)
# Similarity: 316/749 (42.2%)
# Gaps: 340/749 (45.4%)
# Score: 560.0
#
#
#=======================================
BSNT_02893 0 -------------------------------------------------- 0
BPUM_0666 1 ATGAGCGATCAAATCAATATTTTTTTAAAAAGTCATTTTCCTGATCTTGT 50
BSNT_02893 1 --------------------TTGAAT----------------CTT--AAG 12
.||||| ||| |||
BPUM_0666 51 CCTCACGCCGCCTCTTTTTTATGAATGGCCTTTTGGGCTTCGCTTTGAAG 100
BSNT_02893 13 ----AGATTTCGGT--TTG--------------TATATGAGCAAATCTCA 42
|||.| ||| ||| |.|||.||.|| |
BPUM_0666 101 TGGCAGACT--GGTCATTGGGAGAAAAATCAGTTGTATTAGAAA-----A 143
BSNT_02893 43 ACCA-----------TTTTCAA----TCAATTA----TTTGAACAAAACG 73
|.|| |||..|| |||..|| |||||.|.| |
BPUM_0666 144 AGCAGGGGATCGTGCTTTGAAAATTGTCAGATATGCTTTTGATCCA---G 190
BSNT_02893 74 ATGAC-ATATTC--CTTGTGACGAATATGTATAAGCACAA--AACCAATG 118
|.||| |||||| .||||.|||.||.|.||||.|||..| ||| |||
BPUM_0666 191 AAGACGATATTCTATTTGTCACGGATGTCTATACGCAGCATGAAC--ATG 238
BSNT_02893 119 ACAAATTTATAAAAAAATTGAAGGTGTACCAACCGTTTCTAAAGTGTA-- 166
|||| |.||||| |||..|.|.|| |||.||
BPUM_0666 239 ---AATT---------AATGAAG------CAAAAGCTCCT--AGTCTATC 268
BSNT_02893 167 AAAATTATTT--------AAAT---CAAATTCAA----GTAAAGACATAT 201
|.||.|||.| ||.| |||| |.| ||.|.||..|.|
BPUM_0666 269 AGAAATATGTTCGCCGGCAAGTACGCAAA--CGATTGCGTCACGAGCTTT 316
BSNT_02893 202 T--CCTACCCGTTTGAGA-------TAGATGAAG---CTGAAGAATAC-- 237
| |||| |.|.||| |||||| || ||| ||
BPUM_0666 317 TGACCTA----TGTCAGATCAGAACTAGATG-AGCCCCTG------ACCT 355
BSNT_02893 238 --GAGATGCAACAATTTTCCTTGTTATGCAAACCTCGAGACTTACATGTA 285
|||| .||||.|.|||...|||.|.|..|.|||..|||
BPUM_0666 356 TGGAGA------GATTTACGTTGACTTGCCAGCTACAAGATATAC----- 394
BSNT_02893 286 GCTGA-----ACTACTTAAAGCA-GCCAGTA----ATGAAGATTT---TC 322
|.|.| |||.|| ||| |||| || |.||.||||| |.
BPUM_0666 395 GATTACGCCCACTGCT----GCATGCCA-TATGCCAAGAGGATTTCTATG 439
BSNT_02893 323 CATTGAAACCGAGATT-----CGGG------GGTT----ACTCTAT-TGA 356
||..|||.| |.||| |||| |||| |.||||| |.|
BPUM_0666 440 CACCGAATC--AAATTTTGAACGGGAAGCTTGGTTATGAAATCTATCTCA 487
BSNT_02893 357 TTACCCTGATGTTTTCTTTGTGAACATTACAAAAGACATTATTTTC--TT 404
|.| .|||.| |||||.|.||.|||||| .|
BPUM_0666 488 TCA----------ATCTCT----------CAAAACAGATGATTTTCCACT 517
BSNT_02893 405 TATCTATGATGACCGAGGATGTGAAGTCATAGCTCTTGAT---------- 444
|| ||||||||.||.||.|||||..|.||.||....|||
BPUM_0666 518 TA--TATGATGATCGTGGCTGTGATCTTATTGCAGCAGATGCTGAGCGTC 565
BSNT_02893 445 TTCAAACGAATACGTCCA------CTTAATGAAAAATATCACAACTGGGT 488
||||..| ||||.| |||| ||..|||||.|
BPUM_0666 566 TTCAGCC-----CGTCTATGAGGGCTTA-----------CAGCACTGGCT 599
BSNT_02893 489 AGAAGAATAT----------AAATACAT-----------------ATAA 510
|..|||.||| |.|||.|| ||||
BPUM_0666 600 ATTAGACTATGACCGCCCTCAGATAGATCAGTTGTTTACAGAGAAATAA 648
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