Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01245 and BPUM_0678

See Amino acid alignment / Visit BSNT_01245 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_01245___yfnF.1.24716.seq
#    -bsequence dna-align/BPUM_0678___yfnF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01245___yfnF-BPUM_0678___yfnF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01245___yfnF-BPUM_0678___yfnF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01245___yfnF
# 2: BPUM_0678___yfnF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity:     617/1023 (60.3%)
# Similarity:   617/1023 (60.3%)
# Gaps:         222/1023 (21.7%)
# Score: 1719.5
# 
#
#=======================================

BSNT_01245___      1 GTGACCAGCGCGTATTGCACCGTTTTATCAAAAGGAAGATTATATCAGGC     50
                     .|||.||||...|||||.||.|||.||||||..||||||.|||||||.||
BPUM_0678___y      1 ATGAACAGCATATATTGTACGGTTCTATCAAGTGGAAGACTATATCAAGC     50

BSNT_01245___     51 AGT--CGCTTTGTTTAAGTCGTTAGAGCTAGT--------------TGAT     84
                     ..|  ||.|||..|||  ||.||..|||.|||              |.||
BPUM_0678___y     51 CATTGCGTTTTTCTTA--TCATTGAAGCAAGTAGAAAATGGTGCTGTCAT     98

BSNT_01245___     85 CAAGACAGTCCCATTTTTATACTTTGCATGGATGAAGATACGCACCGCGT    134
                     |||||| ||             |.||.||||||||.|       |.||.|
BPUM_0678___y     99 CAAGAC-GT-------------TATGTATGGATGATG-------CTGCAT    127

BSNT_01245___    135 GTTACAGAAGCTG-------AAGATGAA------GCAGCTGAACCTTGTG    171
                     .|     ||.|||       || |||||      .||..|..|.||||| 
BPUM_0678___y    128 TT-----AATCTGCTTCATCAA-ATGAATTTTCCTCATGTCGATCTTGT-    170

BSNT_01245___    172 CCGGTGGCCGCTCTTGAAAATGAATTGCT------TCTGAAGCTGAAGGA    215
                                ||.||.|..|||   |||      .|.|.|||||     
BPUM_0678___y    171 -----------TCATGTACGTGA---GCTCGAAACGCCGGAGCTG-----    201

BSNT_01245___    216 AACTAGAGATCAAAG----------------TGAGTATTGCTGGACGATG    249
                       ||.||||..||||                .||.||||||||||||.|.
BPUM_0678___y    202 --CTGGAGAAAAAAGAGGAACGGGATGCCTCGGAATATTGCTGGACGTTA    249

BSNT_01245___    250 AAGCCGATCTTTCTGCAAGCTGTG-----CTGAATAGCAATCCCGGGCTG    294
                     |||||||    |.||.|....|||     .||||.||.|   .|.|||.|
BPUM_0678___y    250 AAGCCGA----TGTGGATTGAGTGGTTATTTGAACAGGA---GCAGGCAG    292

BSNT_01245___    295 -GAGCGTGTGACGTATATTGACGGGGATCTCTTTTTCTATGCAGATCCAT    343
                      ||||  ||.||.|||.||||.|.||||.|.||.||.|||| |||.||  
BPUM_0678___y    293 AGAGC--GTAACCTATCTTGATGCGGATTTGTTCTTTTATG-AGAGCC--    337

BSNT_01245___    344 CGC---CGATTTTTGAAAACCAGCCGGACTG-CTCGGTGTTGCTTTCACG    389
                     |||   .|||||||.|..|.|||||||| || |||.||.||.|||||..|
BPUM_0678___y    338 CGCAAGTGATTTTTCAGCATCAGCCGGA-TGCCTCTGTATTACTTTCGAG    386

BSNT_01245___    390 AGGGGATATTGTAATCC----CTTC--TTTTGAGAAAGAGCAGATTGACA    433
                     ||||||||||||.||.|    ||||  |..||||.|||.|.||      |
BPUM_0678___y    387 AGGGGATATTGTGATTCCGAGCTTCGATCCTGAGGAAGTGAAG------A    430

BSNT_01245___    434 TGCTGCAGCGTCTTTTAGGCAGATATAATTCCGGGTTTAT-CAGCTTCAA    482
                     ||||.|||...|||||||||.|.||||||||.||.||..| ||..||.||
BPUM_0678___y    431 TGCTTCAGAAGCTTTTAGGCCGCTATAATTCAGGCTTCCTGCATTTTAAA    480

BSNT_01245___    483 GCATGATGATGCAGGCACGG--ATTGCTTGGAG-TGGTGGAAGGAACGCT    529
                     |.| |||||.||.||| |||  ||..|||  || ||||||||.|||...|
BPUM_0678___y    481 GGA-GATGAAGCTGGC-CGGAAATGCCTT--AGCTGGTGGAAAGAAGAAT    526

BSNT_01245___    530 GTCTTG-AGGAATGCAAAAATGCACCGGGTGAAGGGAAATTCGGTGATCA    578
                     | |||| ||||||||||||||||.|||||||||||.||.||.||.|||||
BPUM_0678___y    527 G-CTTGAAGGAATGCAAAAATGCGCCGGGTGAAGGCAAGTTTGGCGATCA    575

BSNT_01245___    579 GGGCTATTTGGATTATATGTCTGAGCTGTTTCCGAATGTGTGTGACATTA    628
                     .||.|||.|.|||.|||||.|..||||||||...||.|||...||.|||.
BPUM_0678___y    576 AGGTTATCTCGATCATATGCCGAAGCTGTTTGAAAAAGTGGAGGATATTC    625

BSNT_01245___    629 CAACACCCGGCGTGAACATCGGCCATTGGAATTATGGACAGCATACGTTT    678
                     .||||...||||||||.||.||.||||||||.|||||.||||||.| .|.
BPUM_0678___y    626 AAACAAAAGGCGTGAATATTGGTCATTGGAACTATGGGCAGCATTC-CTA    674

BSNT_01245___    679 TCCTG--GAAAGATGGCCGGATCGTGCTGGAGGAT-GGCAGTCCGCTGAT    725
                     ||.||  |||| ||||.|||||..||||||||||| |||| ||||||.||
BPUM_0678___y    675 TCGTGAAGAAA-ATGGACGGATTTTGCTGGAGGATGGGCA-TCCGCTCAT    722

BSNT_01245___    726 CTTTTATCATTTCAGCGGATACCGAATCGTCAGCATCAATGAAATCAAAC    775
                     .|..|||||||||||.||.|..||.|||||.||.|...||||.||..|.|
BPUM_0678___y    723 TTGCTATCATTTCAGTGGCTTTCGCATCGTGAGTAAGGATGAGATGCAGC    772

BSNT_01245___    776 AGATTCATGAAACAACCCGCACA----------GATCTGCCGTTTGTGCA    815
                     |.||||||||.|          |          ||||||||||||.|.||
BPUM_0678___y    773 AAATTCATGAGA----------AGGGGAGAGAGGATCTGCCGTTTTTCCA    812

BSNT_01245___    816 TGAACTGTATCAAGAGACAC-TGC--CG-CATATCATTCAGCACAT----    857
                     .|||...||||    ||.|| |||  || |||.|.|||.|    ||    
BPUM_0678___y    813 AGAAGCCTATC----GAAACGTGCTACGTCATGTGATTGA----ATCTGT    854

BSNT_01245___    858 ---GCAAACGTTAGACCC--TGAATTTAACGGTTTTGCTTCAA-------    895
                        |||   |.|.||.||  ||  ||||||||.|.|||  |||       
BPUM_0678___y    855 TGAGCA---GGTCGATCCGATG--TTTAACGGCTATGC--CAAAGTTGAG    897

BSNT_01245___    896 -AAGATGAC-----AACAAATAA    912
                      |.||||||     |        
BPUM_0678___y    898 GAGGATGACGCATGA--------    912


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