Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01264 and BPUM_0694

See Amino acid alignment / Visit BSNT_01264 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_01264___yfmM.1.24716.seq
#    -bsequence dna-align/BPUM_0694___yfmM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01264___yfmM-BPUM_0694___yfmM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01264___yfmM-BPUM_0694___yfmM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01264___yfmM
# 2: BPUM_0694___yfmM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1568
# Identity:    1224/1568 (78.1%)
# Similarity:  1224/1568 (78.1%)
# Gaps:          25/1568 ( 1.6%)
# Score: 4736.5
# 
#
#=======================================

BSNT_01264___      1 ATGAGTATTTTATCTGTAAAGGATTTAAGCCACGGCTTCGGGGACCGGGC     50
                     |||   ||.||||||||.||.|||||||||||.|||||.||.|||.|.||
BPUM_0694___y      1 ATG---ATATTATCTGTTAAAGATTTAAGCCATGGCTTTGGCGACAGAGC     47

BSNT_01264___     51 CATTTTTAATAACGTTTCCTTCCGCCTGTTAAAAGGCGAGCACGTCGGCT    100
                     |||||||.|..|.||.||||||||..|.||||||||||||||.||.||.|
BPUM_0694___y     48 CATTTTTCACGAAGTCTCCTTCCGTTTATTAAAAGGCGAGCATGTTGGTT     97

BSNT_01264___    101 TGATCGGCGCAAACGGTGAAGGAAAATCAACCTTCATGAATATTATTACC    150
                     |.||.|||||.||||||||||||||.|||||.||.||||||||||||||.
BPUM_0694___y     98 TAATTGGCGCCAACGGTGAAGGAAAGTCAACGTTTATGAATATTATTACT    147

BSNT_01264___    151 GGAAAGCTTGAACCTGATGAGGGAAAAGTCGAATGGTCAAAAAATGTCCG    200
                     ||.|||||.||.||.||||..||||||||.||||||.|||||||||||||
BPUM_0694___y    148 GGCAAGCTGGAGCCAGATGCAGGAAAAGTGGAATGGGCAAAAAATGTCCG    197

BSNT_01264___    201 TGTCGGCTATCTGGATCAGCATACCGTGCTGGAAAAAGGAAAATCTATTC    250
                     ||||||.||.|||||||||||.||.|||||.|||||.|||..|.|.||.|
BPUM_0694___y    198 TGTCGGTTACCTGGATCAGCACACTGTGCTAGAAAAGGGACGAACGATCC    247

BSNT_01264___    251 GCGACGTCCTGAAAGACGCGTTCCATTATCTATTTGCGATGGAAGAGGAA    300
                     ||||.||.||..|.||.||.|||||.|||.|||||.|.|||||||..|..
BPUM_0694___y    248 GCGAAGTGCTTCAGGATGCATTCCACTATTTATTTTCCATGGAAGCAGCG    297

BSNT_01264___    301 ATGAACGAGATTTACAACAAAATGGGTGAAGCAGATCCCGACGAGCTCGA    350
                     |||||.||.||||||..|||||||||||||||.|||||.||.|||||.||
BPUM_0694___y    298 ATGAATGACATTTACGGCAAAATGGGTGAAGCCGATCCTGATGAGCTGGA    347

BSNT_01264___    351 AAAGCTGCTTGAAGAAGTCGGCGTCATTCAAGACGCGCTGACAAACAATG    400
                     |||||||.|.||.|||||.||||||||||||||.|||||.||||||||||
BPUM_0694___y    348 AAAGCTGTTAGAGGAAGTGGGCGTCATTCAAGATGCGCTCACAAACAATG    397

BSNT_01264___    401 ATTTTTATGTCATTGATTCCAAGGTGGAAGAAATCGCCCGCGGTCTCGGT    450
                     ||||.|||.||||||||||||||||.||||||||.||..|.|||||.||.
BPUM_0694___y    398 ATTTCTATATCATTGATTCCAAGGTCGAAGAAATAGCGAGAGGTCTTGGG    447

BSNT_01264___    451 TTGAGCGATATCGGATTAGAGCGAGATGTCACCGATTTGAGCGGCGGACA    500
                     ||.|.||||.|.||..|.||.||.|||||.||.||..|||||||||||||
BPUM_0694___y    448 TTAACCGATCTTGGGCTGGACCGTGATGTGACAGAGCTGAGCGGCGGACA    497

BSNT_01264___    501 GCGCACAAAGGTCCTTCTCGCTAAGCTGCTCCTTGAAAAGCCGGAAATTC    550
                     |||.|||||.||..|.||.||.||..||||..|.||.|||||.|||||||
BPUM_0694___y    498 GCGTACAAAAGTATTGCTTGCGAAATTGCTGTTAGAGAAGCCAGAAATTC    547

BSNT_01264___    551 TGCTTCTCGATGAGCCGACCAACTATCTTGATGAACAGCATATTGAATGG    600
                     |.||||||||||||||||||||||||.|.|||||.|||||||||||.|||
BPUM_0694___y    548 TCCTTCTCGATGAGCCGACCAACTATTTAGATGAGCAGCATATTGAGTGG    597

BSNT_01264___    601 CTGAAACGCTACCTGCAGGAATACGAGAACGCGTTCATCCTGATTTCCCA    650
                     |||||.|||||..|.||||||||.||.||.|||||.|||||.|||||.||
BPUM_0694___y    598 CTGAAGCGCTATTTACAGGAATATGAAAATGCGTTTATCCTCATTTCACA    647

BSNT_01264___    651 CGATATTCCGTTCTTGAATAGTGTCATCAACCTGATTTATCACGTTGAAA    700
                     .|||||||||||.||.||.||.||.||.|||.||||.|||||.|||||||
BPUM_0694___y    648 TGATATTCCGTTTTTAAACAGCGTGATTAACTTGATCTATCATGTTGAAA    697

BSNT_01264___    701 ATCAAGAGCTGACACGCTATGTCGGCGACTACCATCAGTTTATGGAAGTC    750
                     ||||||||||.||.||||||||.||.||.||..||||.||||...||||.
BPUM_0694___y    698 ATCAAGAGCTCACGCGCTATGTTGGTGATTATGATCAATTTAAACAAGTG    747

BSNT_01264___    751 TACGAGGTGAAGAAACAG-CAGCTTGAAGCGGCCTATAAAAAGCAGCAGC    799
                     |||||.||.|| |||.|| |||||||||||.||.||.||||.||||||.|
BPUM_0694___y    748 TACGAAGTCAA-AAAGAGCCAGCTTGAAGCAGCTTACAAAAGGCAGCAAC    796

BSNT_01264___    800 AGGAAGTCGCAGAGCTGAAGGATTTCGTCGCCCGCAACAAAGCGCGCGTC    849
                     ||||||||||.||..|.||||||||.||.||..|.|||||||||||.|||
BPUM_0694___y    797 AGGAAGTCGCTGAATTAAAGGATTTTGTGGCAAGAAACAAAGCGCGTGTC    846

BSNT_01264___    850 AGCACGAGAAACATGGCGATGTCCCGCCAAAAGAAACTCGATAAGATGGA    899
                     |||||.|||||.|||||.||||||||.|||||||||||.|||||||||||
BPUM_0694___y    847 AGCACAAGAAATATGGCCATGTCCCGTCAAAAGAAACTAGATAAGATGGA    896

BSNT_01264___    900 TATGATCGAGCTTGCGGCAGAAAAGCCAAAGCCGGAATTCCACTTTAAGC    949
                     ||||||.||.||.||.||||||||.||||||||.||||||||||||||..
BPUM_0694___y    897 TATGATTGAACTCGCAGCAGAAAAACCAAAGCCTGAATTCCACTTTAAAG    946

BSNT_01264___    950 CGGCGAGAACGTCAGGCAAGCTGATTTTTGAAACAAAGGATCTCGTGATC    999
                     ||||..|.||.||.||.||..||||||||||||||||.|||.|.||.||.
BPUM_0694___y    947 CGGCACGGACTTCTGGGAAATTGATTTTTGAAACAAAAGATTTGGTCATT    996

BSNT_01264___   1000 GGTTACGATTCCCCGCTGTCCCGTCCGCTCAACCTCCGCATGGAGCGCGG   1049
                     |||||.|||...||.||.||.|||||..|.||.||....|||||.||.||
BPUM_0694___y    997 GGTTATGATGAACCACTCTCTCGTCCATTGAATCTGAAAATGGAACGTGG   1046

BSNT_01264___   1050 CCAAAAAATCGCCCTTTACGGCGCAAACGGGATCGGAAAAACGACGTTGC   1099
                     .||||||||.||.||||||||.||.||||||||.|||||||||||.||||
BPUM_0694___y   1047 GCAAAAAATTGCGCTTTACGGTGCTAACGGGATTGGAAAAACGACATTGC   1096

BSNT_01264___   1100 TGAAAAGTTTGCTTGGTGAAATCCAGCCG--CTCGAAGGCTCTGTAGAAC   1147
                     ||..||||.|.|||||.|||||....|||  .|||  ||....||.||||
BPUM_0694___y   1097 TGCGAAGTCTCCTTGGAGAAATTTCTCCGATTTCG--GGTGAGGTGGAAC   1144

BSNT_01264___   1148 GCGGTGAGCACAT--CT--ATACCGGCTATTTCGAGCAAGAGGTCAAGGA   1193
                     ||||.||    ||  ||  |||..||.||.||.||||||||.||.||.||
BPUM_0694___y   1145 GCGGAGA----ATTCCTTCATATTGGTTACTTTGAGCAAGAAGTAAAAGA   1190

BSNT_01264___   1194 AACAAACAACAATACGTGCATCGAAGAAGTATGGAGCGAATTCCCTTCTT   1243
                     |..|||||.|||.||.||.||.|||||||||||||||...||||||||||
BPUM_0694___y   1191 ACAAAACAGCAACACTTGTATTGAAGAAGTATGGAGCACCTTCCCTTCTT   1240

BSNT_01264___   1244 ATACGCAGTATGAAATCCGTGCCGCTTTGGCAAAATGCGGACTGACGACA   1293
                     |.|||||.||||||.|..|.||.||..|.||.|||||||||.|.||||||
BPUM_0694___y   1241 ACACGCAATATGAAGTGAGAGCTGCCCTTGCTAAATGCGGATTAACGACA   1290

BSNT_01264___   1294 AAGCATATCGAAAGCCGCGTCGCCGTATTAAGCGGAGGCGAAAAAGCGAA   1343
                     ||.|||||.|||||||||||..|.||.||||||||.||.||||||||.||
BPUM_0694___y   1291 AAACATATTGAAAGCCGCGTGTCTGTTTTAAGCGGTGGAGAAAAAGCAAA   1340

BSNT_01264___   1344 AGTCAGATTGTGCAAGCTAATCAACTCAGAAACAAACCTGCTGGTGCTCG   1393
                     .|||.|..|.||.|||.|.|||||...||||||.|||||.||.||.||||
BPUM_0694___y   1341 GGTCCGTCTTTGTAAGTTGATCAATGAAGAAACCAACCTACTTGTTCTCG   1390

BSNT_01264___   1394 ATGAGCCGACAAACCACTTGGATGTCGATGCCAAGGAAGAGCTCAAGCGC   1443
                     ||||||||||.||.|||||||||||||||||.||.|||||.||.||.||.
BPUM_0694___y   1391 ATGAGCCGACCAATCACTTGGATGTCGATGCGAAAGAAGAACTAAAACGT   1440

BSNT_01264___   1444 GCCCTGAAAGAATATAAAGGCTCCATTCTGCTCATT----TCCCACGAGC   1489
                     ||..||||||||||.|||||...|.|    ||.|||    ||||||||.|
BPUM_0694___y   1441 GCATTGAAAGAATACAAAGGGAGCGT----CTTATTGATCTCCCACGAAC   1486

BSNT_01264___   1490 CAGACTTTTATATGGATATCGCGACAGAAACGTGGAACTGCGAGTCTTGG   1539
                     |.||.||||||...|||.|.||.||.|||||.|||||.|||||.||||||
BPUM_0694___y   1487 CTGAATTTTATCAAGATGTAGCCACTGAAACTTGGAATTGCGAATCTTGG   1536

BSNT_01264___   1540 ACGACGAAAGTGCTTTAA   1557
                     |||||.|||||..|.|||
BPUM_0694___y   1537 ACGACAAAAGTATTATAA   1554


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