Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01274 and BPUM_0707
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_01274___citS.1.24716.seq
# -bsequence dna-align/BPUM_0707___citS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01274___citS-BPUM_0707___citS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01274___citS-BPUM_0707___citS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01274___citS
# 2: BPUM_0707___citS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1852
# Identity: 1070/1852 (57.8%)
# Similarity: 1070/1852 (57.8%)
# Gaps: 440/1852 (23.8%)
# Score: 2869.5
#
#
#=======================================
BSNT_01274___ 1 ---------------------------GTGGTGA--------AAAAGCG- 14
|.||||| ||||| |
BPUM_0707___c 1 ATGAAATTAGTTGAATTAGGGGTTGTAGCGGTGAGGATGGGCAAAAG-GA 49
BSNT_01274___ 15 --GTTCCATTTTTCCCTGCAAACAAAAATAATGGGGCTGATT---GCGGC 59
|| ||.|| |||||||.|||||..|.|||.|.||| | |||
BPUM_0707___c 50 AAGT--CACTT-----TGCAAACGAAAATCTTAGGGTTAATTATCG-GGC 91
BSNT_01274___ 60 -TCTGCTGGTCTTTGTCATTG-GTGTGCTGACCATTACGTTAGCCGTTCA 107
|.||||.| ||||||||| || |..||||||||...||.|...|||
BPUM_0707___c 92 TTTTGCTTG---TTGTCATTGCGT-TATTGACCATTTGCTTTGGTTTTC- 136
BSNT_01274___ 108 GCATACACA-GGGAGAA---CGGAGACAGGCAGAGCAGCTGGCGGTTCAA 153
||||.| |..|||| |.|.||||.||.||.|||||.|||||.|||
BPUM_0707___c 137 ---TACAGACGTCAGAAAGGCAGCGACAAGCTGAACAGCTCGCGGTGCAA 183
BSNT_01274___ 154 ACGGCGAGAACCATTTCCTATATGCCGCCGGTTAAAGAGCTCATTGAGAG 203
||.||.|||||.||.||.||||||||||| ||||
BPUM_0707___c 184 ACCGCTAGAACAATCTCATATATGCCGCC------------CATT----- 216
BSNT_01274___ 204 AAAA----GGCGG-----ACAT--GCGGCTGA-GAC--GCAAGAGGTCA- 238
|||| ||.|| .||| |.|.||.| ||| |.||.||| ||
BPUM_0707___c 217 AAAACATCGGTGGCTACCTCATCCGTGTCTCAGGACGAGGAACAGG-CAG 265
BSNT_01274___ 239 ---TTGAACAAATGAAAGAACAGACTGGC---GCGTTTGCCATTTATGTT 282
||||.|||||||||||.|| .|.| ||...||||||.|...||
BPUM_0707___c 266 TACTTGAGCAAATGAAAGATCA---AGTCAAAGCACATGCCATCTTCATT 312
BSNT_01274___ 283 TTGGACGA---AAAAGGAGA-----------CATTCGCAGCGCC------ 312
||.| ||||||.|| |||.||.| ||
BPUM_0707___c 313 ----ACCAATCAAAAGGGGAAGGTCCTTTTTCATACGAA---CCATGAGA 355
BSNT_01274___ 313 ---TCTGGAAAA-----AGCGGA-TTAAAGAAACTGGAG-----CGCAGC 348
|..|.|||| ||.|.| |||.|| |||| |.|.||
BPUM_0707___c 356 ATGTAGGCAAAACCATCAGTGTATTTAGAG-----GGAGAAGTACCCTGC 400
BSNT_01274___ 349 AGAGAAATTTTGTTTGGTGGTTCGCATGTTTCTGAAAC------AAAAGC 392
|.|||||.|| ||| |..|||
BPUM_0707___c 401 ----------TATTTGGGGG---------------AACCTCCATATCAGC 425
BSNT_01274___ 393 GGATGGA--CGAAGAGTGA--------TCAGAGGAAGCGCGCCGATCATA 432
||.| || |.||..|||| |||||||.||.||.||.||.||.
BPUM_0707___c 426 GGGT-GATTCTAATGGTGAAACCGTTGTCAGAGGTAGTGCCCCAATTATG 474
BSNT_01274___ 433 AAAGAACAGA-AGGGATACAGC-----CAAGTGATCGGCAGCGTGTCTGT 476
|||||| | ||||| ||| .||.|.||.||||..||..|.||
BPUM_0707___c 475 AAAGAA---ACAGGGA---AGCATGAAGAAATTATTGGCACAGTCACCGT 518
BSNT_01274___ 477 TGATTTTCTACAAACGGAGACAGAGCAA-----AG--CATCAA-----AA 514
.||.|||.||.|||.|||.|..||.||| || |||||| .|
BPUM_0707___c 519 CGAATTTTTAAAAAAGGAAATCGATCAAGCGACAGCCCATCAACTATTCA 568
BSNT_01274___ 515 AGCATTTGAGAAATTTGAGTGTGATTGCTGTGCTTGTACTGCTGC----- 559
||| |.||..|| ||||||.|.|||||.||..|||
BPUM_0707___c 569 AGC---TTAGCTAT---------ATTGCTCTACTTGTCCTCTTGCCAGGT 606
BSNT_01274___ 560 ----TCG----GATTTATTGGCGCCGCCGTGCTGGCGAAAAGCATCAGAA 601
||| |||||.|| |..|.|.|||.||..|.|
BPUM_0707___c 607 ATATTCGGAGCGATTTTTT-------------TAACAAGAAGTATTCGTA 643
BSNT_01274___ 602 AGGATACGCTTGGGCTTGAGCCGCATGAGATCGCGGCTCTATATCGTGAG 651
|.|||||..|.||||||||.||||||||.||.||..|..|||..||.||.
BPUM_0707___c 644 AAGATACATTAGGGCTTGAACCGCATGAAATTGCTTCATTATTCCGAGAA 693
BSNT_01274___ 652 AGAAACGCAATGCTTTTCGCGATTCGAGAAGGGATTATTGCCACCAAT-- 699
|||.|.||.|||||..|.|||||...||||||||||||||| ||
BPUM_0707___c 694 AGAGAAGCGATGCTGCTTGCGATAAAAGAAGGGATTATTGC-----ATTT 738
BSNT_01274___ 700 ---CGTGAAGGCGTCG-TCACCATGATGAACGTATCGGCGGCCGAGATGC 745
||..|||||| || |.||.||||||||...|||.||.|...||||||
BPUM_0707___c 739 GACCGCAAAGGCG-CGATGACGATGATGAATACATCTGCTGAACAGATGC 787
BSNT_01274___ 746 TGAAGCT-GC-------CCGAGCCTGTGATCCATCTTCCTATAGATGACG 787
| | || |||||| |.|..||||.|||.|||.|.|
BPUM_0707___c 788 T-----TCGCGTTTCATCCGAGC------TGCCGCTTCATATTGATCAAG 826
BSNT_01274___ 788 TCATGCCGGGAG-CAGGGCTGATGTC----TGTGCTTGAACAAGGAGA-- 830
||.||||...|| || ||.|| |.|..||.||..|.||||
BPUM_0707___c 827 TCTTGCCAAAAGCCA------ATCTCCTTTTCTATTTAAAGGAAGAGACG 870
BSNT_01274___ 831 ----AATGCTGCCGAACCAGGAGGTAAGCGTC---AACGATCAA------ 867
|| ||||||...|| ||.|||| ||..||.||
BPUM_0707___c 871 ATTGAA-----CCGAACATCGA---AACCGTCGTAAATAATAAAACCTAT 912
BSNT_01274___ 868 GTGTTTATTATCAATACGAAAGTGATGAATCAAGGCGGGCAGGTGTAT-- 915
||.||.|.|.|.|| .||||||.|| ||||.|...||.||.|.|
BPUM_0707___c 913 GTCTTAAATGTGAA---AAAAGTGGTG---CAAGACAACCATGTCTTTGG 956
BSNT_01274___ 916 -GGGATTGTCGTCAGCTTCAGGGAGAAAACAGAGCTGAAGAAGCTGATCG 964
|||||| ||.|||||||||||||||||||||||||.|||||||.|.|
BPUM_0707___c 957 AGGGATT---GTGAGCTTCAGGGAGAAAACAGAGCTGACGAAGCTGTTGG 1003
BSNT_01274___ 965 ACACATTGACAGAGGTTCGCAAATATTCAGAGGATCTCAGGGCGCAGACT 1014
|.|||||.||.||.||..||.||||||||||.||.||.|||||.||.||.
BPUM_0707___c 1004 ATACATTAACGGAAGTCAGCCAATATTCAGAAGACCTGAGGGCACAAACG 1053
BSNT_01274___ 1015 CATGAATTTTCAAATAAGCTTTATGCGATTTTAGGGCTGCTTGAGCTTGG 1064
||.|||||.|||||||||||.||.||.||||||||..||||||||||
BPUM_0707___c 1054 CACGAATTCTCAAATAAGCTGTACGCCATTTTAGGTTTGCTTGAGCT--- 1100
BSNT_01274___ 1065 GGAGTA---TGATGAAGCCATTGATCTGATTAAAGAGGAATATGCGATGC 1111
|.||.| .||||||||||||||..|.||.|||||.||||||.||.|||
BPUM_0707___c 1101 GAAGCAAGTGGATGAAGCCATTGACTTAATAAAAGAAGAATATACGCTGC 1150
BSNT_01274___ 1112 AAAATGAACAGCATGATCTTTTATTCCAT-----AACATCCATTCGCAGC 1156
||||....|||||.|| ||||.| .|| || ||.|..||.|...
BPUM_0707___c 1151 AAAACCGTCAGCACGA---TTTACT-GATGAAGCAA-ATACGATCTCCTA 1195
BSNT_01274___ 1157 AGGTGCAGGCCATTTTGTTAGGGAAAATAAGCAAGGCATCGGAAAAGAAG 1206
|..|.||.||||||.|..|.||.||.|||.|.||.||.||.||.||||||
BPUM_0707___c 1196 AAATACAAGCCATTCTACTTGGCAAGATAGGGAAAGCCTCTGAGAAGAAG 1245
BSNT_01274___ 1207 GT-------CAAGCTGGTGATTGATGAGAACAGCTCACTCGCGCCTCTTC 1249
|| || .||.||.||.||.||.|||.|.|.|||.||||
BPUM_0707___c 1246 GTACATTTCCA-------CATCGACGAAAATAGTTCATTGGAGCCGCTTC 1288
BSNT_01274___ 1250 CTGCGCATATCGGCTTGTCCCATCTTATTACGATTATTGGCAATTTAATT 1299
|.||.|||.|..|..|.||.||..|||||||.||.|||||.|||.|..|.
BPUM_0707___c 1289 CAGCACATTTAAGTCTATCTCACTTTATTACCATCATTGGTAATCTGGTA 1338
BSNT_01274___ 1300 GATAACGCTTTCGAAGCTGTAGC-------GGAGCAAAGCGTGAAGGAAG 1342
||||||||.||.||.||.||| | |||| |.|||.||.|..||
BPUM_0707___c 1339 GATAACGCCTTTGAGGCCGTA-CTAAATAAGGAG--ACGCGCGAGGTCAG 1385
BSNT_01274___ 1343 TTTTGTTTTTTATCACGGATATGGGCCATGACATTGTCATTGAAGTATCA 1392
..|.||.|||||.|||||.||...|||.|||.||||.||||||||.
BPUM_0707___c 1386 ----CCTGTTCATCACAGATATTGGGTTTGATATTATCATAGAAGTATCT 1431
BSNT_01274___ 1393 GACACAGGGCCCGGTGT--GCCGCCAGAGAAAATAGAAGCTGT------G 1434
||..||||....||.|| || |||.| |||| ||.| .
BPUM_0707___c 1432 GATTCAGGTGATGGAGTAGGC-----GAGGA---AGAA-CTTTCACATAT 1472
BSNT_01274___ 1435 TTTGA-GAGAGGCTATTCTTCAAAGGGGATG-AGGA-GAGGCTACGGTCT 1481
|||.| .||||||.||||.||||||||| | |||| ||||||||||.||
BPUM_0707___c 1473 TTTCACAAGAGGCCATTCGTCAAAGGGG--GAAGGACGAGGCTACGGACT 1520
BSNT_01274___ 1482 GGCCAATGTGAAAGACTCAGTGCGT----GAACTGGGCGGCTGGATCGAA 1527
.||.||||||||||| ||||| | |||||.||.||||||||.|||
BPUM_0707___c 1521 AGCGAATGTGAAAGA---AGTGC-TGGACGAACTTGGGGGCTGGATTGAA 1566
BSNT_01274___ 1528 CTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTGTTTATACCGAA 1577
.||.||||.||||||...|||||.||..|.|||||||..|..||||||||
BPUM_0707___c 1567 GTGACGAACCAAAAAGAAGGCGGTGCCATCTTCACTGCATACATACCGAA 1616
BSNT_01274___ 1578 GGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGAT 1627
||..|||||||||||||..
BPUM_0707___c 1617 --AGGCACAAAGGGGGAATAA----------------------------- 1635
BSNT_01274___ 1628 GA 1629
BPUM_0707___c 1635 -- 1635
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