Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01389 and BPUM_0713
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_01389___padR.1.24716.seq
# -bsequence dna-align/BPUM_0713___padR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01389___padR-BPUM_0713___padR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01389___padR-BPUM_0713___padR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01389___padR
# 2: BPUM_0713___padR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 622
# Identity: 363/622 (58.4%)
# Similarity: 363/622 (58.4%)
# Gaps: 137/622 (22.0%)
# Score: 981.5
#
#
#=======================================
BSNT_01389___ 1 ATGAGAGTATTAAAATACGCCA-TATTAGGGCTTTTGCGAAAAG-GCGAA 48
||||||||.||.|||||.|||| |.|| |||||....||..|| |.||.
BPUM_0713___p 1 ATGAGAGTTTTGAAATATGCCATTCTT--GGCTTACTAGATCAGTGTGAG 48
BSNT_01389___ 49 TTGAGCGGATACGATATTACGAGTTATTTTAAAGAGGAGCTCGGCCAATT 98
.|||..|||||||||||.||.|...|||||||.||....||.||.||.||
BPUM_0713___p 49 CTGACTGGATACGATATCACCAAACATTTTAAGGATTCTCTTGGACAGTT 98
BSNT_01389___ 99 TTGGAGCGCCAAACACAGCCAGATTTATCCCGAGCTCAAAAAGCTGACGG 148
||||||.||.|||||.|||||.|||||.||.|||||.|||..|||.||.|
BPUM_0713___p 99 TTGGAGTGCGAAACATAGCCAAATTTACCCTGAGCTGAAACGGCTCACAG 148
BSNT_01389___ 149 ATGAAGGGTTTATT-------ACGTTCCGGACAACG-ATTCAAGGCACGA 190
|||||||||||||| |.||| || ||.|||||.|.||
BPUM_0713___p 149 ATGAAGGGTTTATTGAATTTGATGTT--------CGTATACAAGGGAAGA 190
BSNT_01389___ 191 AGCTGGAGAAAAAGATGTA------CACCCTGACAGACAACGGA-AAACA 233
||||||||||||||.|.|| ||| |.||.|| ||| ||.||
BPUM_0713___p 191 AGCTGGAGAAAAAGGTCTATCAAATCAC----AGAGGCA--GGACAAGCA 234
BSNT_01389___ 234 GGA--GCTTCATGCCTGGCTGATCCGCCACCAG--CCGATACCCGAGACG 279
|.| ||.||| .|||.|.| .|.||..|| |||||.||.||.||.
BPUM_0713___p 235 GCATTGCATCA---ATGGTTAA--GGACAAAAGACCCGATCCCAGAAACA 279
BSNT_01389___ 280 GTGAAGGATGAATTTATGCTGAAGGCTTATTTTATTTCTTCTCTATCGCG 329
...|||||||||||.|||||.||..| |||||...|||.|||||| |
BPUM_0713___p 280 ACAAAGGATGAATTCATGCTCAAAAC--ATTTTTCATCTCCTCTAT---G 324
BSNT_01389___ 330 G-----CAGGAGGCTTCTGATTTATTTACAGACCAGCTTCAAAAACGCA- 373
| .||||.||..||||..|.||||||.|.||.||.|.|.|.||||
BPUM_0713___p 325 GACAAAAAGGAAGCGGCTGACCTGTTTACACATCAACTACTAGAGCGCAC 374
BSNT_01389___ 374 ---------AGGCTAAGCTGTCCGATCTGCAGGAAAGCTATGAAAAGCTT 414
||.| |.||| ||||| |.|||||.
BPUM_0713___p 375 GAAGAAAGTAGAC-ATGCT--------------AAAGC----AGAAGCTG 405
BSNT_01389___ 415 ATGGCTTCAGCAAAG-------CCGATG-----TCGTTTTCTTCACCGGA 452
.|.||.|.|.||.|| |.|.|| |||.|||.||||.||.|
BPUM_0713___p 406 CTCGCGTTAACAGAGGAAGATCCGGGTGCTGAATCGCTTTATTCAGCGCA 455
BSNT_01389___ 453 CTTCGGCCACTATCTTGTGCTGACGAAAGCGC---TGGAGCGGGAGAAAA 499
.||.||.||.|||.|.|||||||| |||.|| ||.| .|||||||
BPUM_0713___p 456 ATTTGGGCATTATTTAGTGCTGAC--AAGGGCAATTGAA---AGAGAAAA 500
BSNT_01389___ 500 A--TTACGTTTCTTGGCTGGAATCAA----TTTTAGCTATGATAGATAAG 543
| .||.||....|||||.| |.||| || |.|.|
BPUM_0713___p 501 AGGCTATGTCCGCTGGCTCG-AGCAAACCCTT-------------AAACG 536
BSNT_01389___ 544 GATTAA---------------- 549
||||.|
BPUM_0713___p 537 GATTGATTCATCTGCGCTCTAA 558
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