Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01280 and BPUM_0714

See Amino acid alignment / Visit BSNT_01280 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:52
# Commandline: needle
#    -asequence dna-align/BSNT_01280___yflM.1.24716.seq
#    -bsequence dna-align/BPUM_0714___nos.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01280___yflM-BPUM_0714___nos.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01280___yflM-BPUM_0714___nos.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01280___yflM
# 2: BPUM_0714___nos
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1159
# Identity:     777/1159 (67.0%)
# Similarity:   777/1159 (67.0%)
# Gaps:         119/1159 (10.3%)
# Score: 2410.0
# 
#
#=======================================

BSNT_01280___      1 TTGGAAGAAA--AAGAAATACTCTGGAACGAAGCGAAAGCGTTTATTGCC     48
                     |||  ||.||  |||||....|.|||||.|||||..||||.||||||.|.
BPUM_0714___n      1 TTG--AGTAATCAAGAAGCGTTGTGGAATGAAGCAGAAGCTTTTATTTCT     48

BSNT_01280___     49 GCATGCTATCAGGAATTGGGAAAGGAGGAGGAAGTGAA---AGACCGTCT     95
                     |.|||||||.|.||||||||.|||....|.||||.|||   ||..||.||
BPUM_0714___n     49 GTATGCTATGAAGAATTGGGCAAGTCAAATGAAGAGAAGGCAGCACGACT     98

BSNT_01280___     96 CGAGGACATTAAAAGTGAAATTGAC-CTGACCGGGAGCTATGTACATACG    144
                     ..|.||.||.|||...||||||.|| || |..||||..|||...||.||.
BPUM_0714___n     99 GCATGAAATAAAACAAGAAATTAACTCT-AAAGGGACGTATACTCACACA    147

BSNT_01280___    145 AAGGAAGAGCTAGAGCACGGAGCGAAAATGGCTTGGAGAAACAGCAACCG    194
                     .|.||.||..|.|.||||||||||||||||||.|||.|.|||||||||||
BPUM_0714___n    148 CAAGAGGAATTGGCGCACGGAGCGAAAATGGCATGGCGCAACAGCAACCG    197

BSNT_01280___    195 CTGCATCGGCAGATTGTTCTGG--AATTCGCTGAATGTTATTGACAGACG    242
                     ||||||.|||.|.||.||.|||  ||  |.|||.|||||...|||.|.||
BPUM_0714___n    198 CTGCATTGGCCGTTTATTTTGGTCAA--CCCTGCATGTTCACGACTGCCG    245

BSNT_01280___    243 AGACGTCCGGAC-GAAGGAGGAAGTGCGTGACGCCCTCTTTCACCATATT    291
                     ..|.||...||| ||| ||.||.|||...||.||.||||||||.||||||
BPUM_0714___n    246 TCATGTGAAGACAGAA-GAAGAGGTGAAAGAGGCACTCTTTCATCATATT    294

BSNT_01280___    292 GAAACCGCCACCAATAACGGCAAAATCAGACCGACCATTACGATTTTCCC    341
                     ||....||.||.|||||.||.|||||||.|||..||||||||||.||.||
BPUM_0714___n    295 GAGTATGCGACAAATAATGGGAAAATCAAACCATCCATTACGATCTTTCC    344

BSNT_01280___    342 TCCGGAAGAGAAGGGT---GAAAAGCAAGTCGAGATCTGGAATCATCAGC    388
                     |||   |||.||.|.|   .|||||.|||||...||.|..||||||||.|
BPUM_0714___n    345 TCC---AGAAAATGATTCGCAAAAGGAAGTCATCATTTATAATCATCAAC    391

BSNT_01280___    389 TGATCCGGTACGCTGGATATGAGTCAGACGGAGAA----AGAATCGGCGA    434
                     |..|.||.||.||.||.||||    ||||||||.|    |..||||||||
BPUM_0714___n    392 TCGTTCGTTATGCAGGCTATG----AGACGGAGTATGGTATCATCGGCGA    437

BSNT_01280___    435 CCCGGCTTC-CTGTTCCCTGA-------CAGCAGCCTGCGAAGAGCTCGG    476
                     |..|||||| ||      |||       .|||.|  ||.||||..|..||
BPUM_0714___n    438 CGAGGCTTCTCT------TGAATTAACTAAGCTG--TGTGAAGCCCATGG    479

BSNT_01280___    477 CTGGCGCGGAGAGCGAACGGATTTTGACCTGCTGCCGCTCATTTTTCGCA    526
                     ||||...||.||..|.|||.|||||||..|.|||||.|||||.|||| .|
BPUM_0714___n    480 CTGGAAAGGTGAAGGCACGCATTTTGATATCCTGCCTCTCATGTTTC-AA    528

BSNT_01280___    527 TGAAAGGCGACGAACAGCCTG-TCTGGTATGAGCTGCCGCGTTCACTTGT    575
                     ..||||  .|..|||.|||.| ||| |||||||||.|||.....|.||||
BPUM_0714___n    529 CTAAAG--AATCAACCGCCAGTTCT-GTATGAGCTACCGAAAGAAATTGT    575

BSNT_01280___    576 ----GA--TCGAGGTTCCAATCATACATCCGGACAT-CGAGGCGTTTGCT    618
                         ||  |||||      ||||..|||||||| || .||.|..|||..|
BPUM_0714___n    576 CCAAGAAGTCGAG------ATCACCCATCCGGA-ATATGAAGGATTTCGT    618

BSNT_01280___    619 GATTT-GGAGCTGAAGTGGTACGGCGTGCCTATCATCTCTGATATGAAGC    667
                     ||||| ||| |||||.|||||||.|||.||.||.||..||||||||||..
BPUM_0714___n    619 GATTTAGGA-CTGAAATGGTACGCCGTTCCGATTATTGCTGATATGAAAT    667

BSNT_01280___    668 TTGAGGTCGGGGGCATTCATTATAATGCCGCGCCATTTAACGGCTGGTAT    717
                     |.|||.|.||.||.||||||||.|||||.|||||.||.||.|||||||||
BPUM_0714___n    668 TGGAGATTGGCGGTATTCATTACAATGCAGCGCCGTTCAATGGCTGGTAT    717

BSNT_01280___    718 ATGGGCACGGAGATCGGAGCGAGAAACCTCGCAGATGAAAAGCGGTACGA    767
                     ||||||||.||.||.||.||..|.|||||.||.||||||||.||.|||.|
BPUM_0714___n    718 ATGGGCACAGAAATTGGCGCACGTAACCTAGCCGATGAAAATCGCTACAA    767

BSNT_01280___    768 CAAGCTGAAAAAAGTAGCGTCCGTGAT--------------CGGCATCGC    803
                     .|.||||||||||||.||.||   |||              ||.||    
BPUM_0714___n    768 TATGCTGAAAAAAGTCGCTTC---GATTTTAGGACTGGACACGACA----    810

BSNT_01280___    804 CGCTGATTACAATACG--GATTTATGGAAGGATCAAGCGCTAGTTGAATT    851
                            .|.|||.||  |.||  ||||||||..||||..|.|||||.||
BPUM_0714___n    811 -------AAGAATGCGTCGCTT--TGGAAGGACAAAGCCATTGTTGAGTT    851

BSNT_01280___    852 GAATAAAGCTGTGCTGCACTCGTA-TAAAAAGCAGGGTGTCAGCATCGTT    900
                     ||||...||.||.||.||.||.|| ..|.|||||||| ||.|.|||.|||
BPUM_0714___n    852 GAATGTGGCGGTTCTTCATTCTTACCGAGAAGCAGGG-GTGACCATTGTT    900

BSNT_01280___    901 GACCATCATACAGCGGCAAGCCAGTTTAAACGGTTTGAAGAACAGGAGGA    950
                     ||.||.||||||||.|||...||.||.||||.|||.|||.|.||.||.||
BPUM_0714___n    901 GATCACCATACAGCAGCACATCAATTCAAACAGTTCGAAAAGCAAGAAGA    950

BSNT_01280___    951 AGAAGCGGGCAGAAAGCTGACGGGAGACTGGACGTGGCTGATTCCGCCAA   1000
                     |.|.||.|.|.|.|||||.||.||.||||||||.|||||||||||.||..
BPUM_0714___n    951 AAAGGCTGACCGTAAGCTTACTGGGGACTGGACTTGGCTGATTCCACCGG   1000

BSNT_01280___   1001 TTTCACCCGCTGCCACTCATATCTTCCAC-CGC-TCCTATGATAACTCAA   1048
                     |.|||||.|||||.||.||.||||||||| .|| |  |||||.||..|.|
BPUM_0714___n   1001 TCTCACCAGCTGCGACCCACATCTTCCACAAGCAT--TATGACAATACCA   1048

BSNT_01280___   1049 TCGTTAAGCCGAACTATTTTTATCAAGATAAGCCTTATGA-GTAA-----   1092
                     |.||.||||||||.||||||||||||||.|||||.|||.| |.||     
BPUM_0714___n   1049 TTGTGAAGCCGAATTATTTTTATCAAGAAAAGCCCTATCATGGAACAGAA   1098

BSNT_01280___   1092 ---------   1092
                              
BPUM_0714___n   1099 AAAGCCTAG   1107


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